miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19005 5' -53.7 NC_004684.1 + 67196 0.66 0.847813
Target:  5'- aGCGuuGCCAGGGCCaccuugGugGuGGUcccGACCa -3'
miRNA:   3'- aUGCu-CGGUCUCGGa-----CugC-UCA---UUGG- -5'
19005 5' -53.7 NC_004684.1 + 66147 0.77 0.274398
Target:  5'- -cUGGGCCGGGGCCgGGCGAccGACCa -3'
miRNA:   3'- auGCUCGGUCUCGGaCUGCUcaUUGG- -5'
19005 5' -53.7 NC_004684.1 + 64923 0.69 0.640862
Target:  5'- gGCGAcCCAGGuggcggcggugagcGCCUGGCGggcGGUGGCCc -3'
miRNA:   3'- aUGCUcGGUCU--------------CGGACUGC---UCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 64709 0.68 0.720493
Target:  5'- gGCGGccGCCAGGGCCUccauCGGGUccaucuuguGGCCg -3'
miRNA:   3'- aUGCU--CGGUCUCGGAcu--GCUCA---------UUGG- -5'
19005 5' -53.7 NC_004684.1 + 62910 0.77 0.247601
Target:  5'- gGCGGGCCAGGcCCUGGCcGGUGACg -3'
miRNA:   3'- aUGCUCGGUCUcGGACUGcUCAUUGg -5'
19005 5' -53.7 NC_004684.1 + 61928 0.71 0.567254
Target:  5'- gUGCGGGCCAcggcacccgccGGGCCUGGugcacCGGauGUAACCg -3'
miRNA:   3'- -AUGCUCGGU-----------CUCGGACU-----GCU--CAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 61854 0.69 0.666192
Target:  5'- --aGGGUCAcAGCCUGGCGGG--ACCa -3'
miRNA:   3'- augCUCGGUcUCGGACUGCUCauUGG- -5'
19005 5' -53.7 NC_004684.1 + 58321 0.66 0.839107
Target:  5'- gGCGAcGCCGG-GUCaUGGCGcgcccGGUGGCCc -3'
miRNA:   3'- aUGCU-CGGUCuCGG-ACUGC-----UCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 55302 0.67 0.802189
Target:  5'- aACGGGUgGGAcgGCCUGccgauCGAGUucGCCg -3'
miRNA:   3'- aUGCUCGgUCU--CGGACu----GCUCAu-UGG- -5'
19005 5' -53.7 NC_004684.1 + 54795 0.67 0.782616
Target:  5'- cGCGcGCCAgGAGCCgaugacccUGGCuGAGUucGACCg -3'
miRNA:   3'- aUGCuCGGU-CUCGG--------ACUG-CUCA--UUGG- -5'
19005 5' -53.7 NC_004684.1 + 54353 0.68 0.720493
Target:  5'- cGCGgaAGCCGaccGGCCcGGCGAcGUAACCg -3'
miRNA:   3'- aUGC--UCGGUc--UCGGaCUGCU-CAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 50035 0.67 0.752107
Target:  5'- aGCGuGGCCGGuGCCUGGCuccaGGCCa -3'
miRNA:   3'- aUGC-UCGGUCuCGGACUGcucaUUGG- -5'
19005 5' -53.7 NC_004684.1 + 48577 1.09 0.001633
Target:  5'- cUACGAGCCAGAGCCUGACGAGUAACCc -3'
miRNA:   3'- -AUGCUCGGUCUCGGACUGCUCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 48569 0.68 0.709763
Target:  5'- cUGCGcGCC-GAGCUUGACGAuggaguUGGCCa -3'
miRNA:   3'- -AUGCuCGGuCUCGGACUGCUc-----AUUGG- -5'
19005 5' -53.7 NC_004684.1 + 44572 0.66 0.830182
Target:  5'- -uCGGGUCAG-GCagGACGuAGUGGCCa -3'
miRNA:   3'- auGCUCGGUCuCGgaCUGC-UCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 42198 0.66 0.839107
Target:  5'- -gUGGGCCguGGAGCUggUGGcCGAcGUGGCCg -3'
miRNA:   3'- auGCUCGG--UCUCGG--ACU-GCU-CAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 42077 0.69 0.666192
Target:  5'- aUACGccGCCAGGGCC-GACGAaccGCCg -3'
miRNA:   3'- -AUGCu-CGGUCUCGGaCUGCUcauUGG- -5'
19005 5' -53.7 NC_004684.1 + 38680 0.66 0.830181
Target:  5'- gACGcGCCAGAaaGCCUGGagcgacaggGAGUGuucGCCg -3'
miRNA:   3'- aUGCuCGGUCU--CGGACUg--------CUCAU---UGG- -5'
19005 5' -53.7 NC_004684.1 + 38115 0.71 0.567254
Target:  5'- cGCGGuGCCGGAGCaaGugGAG--GCCg -3'
miRNA:   3'- aUGCU-CGGUCUCGgaCugCUCauUGG- -5'
19005 5' -53.7 NC_004684.1 + 33736 0.69 0.67716
Target:  5'- aGCGAcGCCaugcccggcgaGGGGUcgCUGACGAgGUAGCCg -3'
miRNA:   3'- aUGCU-CGG-----------UCUCG--GACUGCU-CAUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.