miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19005 5' -53.7 NC_004684.1 + 17515 0.67 0.772588
Target:  5'- cGCGAGCgCGGuGCCacgccgGACGAcGUggUCg -3'
miRNA:   3'- aUGCUCG-GUCuCGGa-----CUGCU-CAuuGG- -5'
19005 5' -53.7 NC_004684.1 + 22261 0.69 0.666193
Target:  5'- cGCGAGCaugGGAccGCCUGGCG-GcGGCCa -3'
miRNA:   3'- aUGCUCGg--UCU--CGGACUGCuCaUUGG- -5'
19005 5' -53.7 NC_004684.1 + 31004 0.69 0.688086
Target:  5'- gGCGcAGCUGG-GCCUGACGcc-GACCg -3'
miRNA:   3'- aUGC-UCGGUCuCGGACUGCucaUUGG- -5'
19005 5' -53.7 NC_004684.1 + 48569 0.68 0.709763
Target:  5'- cUGCGcGCC-GAGCUUGACGAuggaguUGGCCa -3'
miRNA:   3'- -AUGCuCGGuCUCGGACUGCUc-----AUUGG- -5'
19005 5' -53.7 NC_004684.1 + 64709 0.68 0.720493
Target:  5'- gGCGGccGCCAGGGCCUccauCGGGUccaucuuguGGCCg -3'
miRNA:   3'- aUGCU--CGGUCUCGGAcu--GCUCA---------UUGG- -5'
19005 5' -53.7 NC_004684.1 + 27209 0.68 0.741676
Target:  5'- gUGCGAuCCAGAGCCUucucauCGGGccgcUGACCg -3'
miRNA:   3'- -AUGCUcGGUCUCGGAcu----GCUC----AUUGG- -5'
19005 5' -53.7 NC_004684.1 + 29135 0.67 0.752107
Target:  5'- gUGCGAGCUGGugguGCC-GACGcAGUucGCCg -3'
miRNA:   3'- -AUGCUCGGUCu---CGGaCUGC-UCAu-UGG- -5'
19005 5' -53.7 NC_004684.1 + 50035 0.67 0.752107
Target:  5'- aGCGuGGCCGGuGCCUGGCuccaGGCCa -3'
miRNA:   3'- aUGC-UCGGUCuCGGACUGcucaUUGG- -5'
19005 5' -53.7 NC_004684.1 + 8442 0.67 0.762415
Target:  5'- -cCGGGCCAGGGaaCCUGACuccccGGUGcgcGCCa -3'
miRNA:   3'- auGCUCGGUCUC--GGACUGc----UCAU---UGG- -5'
19005 5' -53.7 NC_004684.1 + 8846 0.69 0.666193
Target:  5'- gACuGGCCAuGGGCCUGgACGuGUcGCCu -3'
miRNA:   3'- aUGcUCGGU-CUCGGAC-UGCuCAuUGG- -5'
19005 5' -53.7 NC_004684.1 + 64923 0.69 0.640862
Target:  5'- gGCGAcCCAGGuggcggcggugagcGCCUGGCGggcGGUGGCCc -3'
miRNA:   3'- aUGCUcGGUCU--------------CGGACUGC---UCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 19556 0.7 0.632035
Target:  5'- gGCGGuGCCAGgucuccgGGCCUGGCGucGUGcACCu -3'
miRNA:   3'- aUGCU-CGGUC-------UCGGACUGCu-CAU-UGG- -5'
19005 5' -53.7 NC_004684.1 + 27511 0.73 0.432853
Target:  5'- gGCGGGCCAGAGgCUGGCaagGAcGUGcgcaGCCg -3'
miRNA:   3'- aUGCUCGGUCUCgGACUG---CU-CAU----UGG- -5'
19005 5' -53.7 NC_004684.1 + 28803 0.72 0.513709
Target:  5'- -cCGAGCUGGuGCUcGACGGuGUGACCg -3'
miRNA:   3'- auGCUCGGUCuCGGaCUGCU-CAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 61928 0.71 0.567254
Target:  5'- gUGCGGGCCAcggcacccgccGGGCCUGGugcacCGGauGUAACCg -3'
miRNA:   3'- -AUGCUCGGU-----------CUCGGACU-----GCU--CAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 15929 0.71 0.567254
Target:  5'- -cCGGcaCCGGAGCCUGGCGGG--GCCu -3'
miRNA:   3'- auGCUc-GGUCUCGGACUGCUCauUGG- -5'
19005 5' -53.7 NC_004684.1 + 38115 0.71 0.567254
Target:  5'- cGCGGuGCCGGAGCaaGugGAG--GCCg -3'
miRNA:   3'- aUGCU-CGGUCUCGgaCugCUCauUGG- -5'
19005 5' -53.7 NC_004684.1 + 26048 0.7 0.578152
Target:  5'- gGCG-GCCAGGGC--GGCGAGUucgaGGCCa -3'
miRNA:   3'- aUGCuCGGUCUCGgaCUGCUCA----UUGG- -5'
19005 5' -53.7 NC_004684.1 + 5870 0.7 0.611079
Target:  5'- gGCaGGCCGGgcagcaccAGCCUGAcCGGGUGGCg -3'
miRNA:   3'- aUGcUCGGUC--------UCGGACU-GCUCAUUGg -5'
19005 5' -53.7 NC_004684.1 + 19278 0.7 0.622105
Target:  5'- --gGAGCCGGAGCCaccUGGCGAcggAGCg -3'
miRNA:   3'- augCUCGGUCUCGG---ACUGCUca-UUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.