miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19005 5' -53.7 NC_004684.1 + 48577 1.09 0.001633
Target:  5'- cUACGAGCCAGAGCCUGACGAGUAACCc -3'
miRNA:   3'- -AUGCUCGGUCUCGGACUGCUCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 15284 0.67 0.802189
Target:  5'- cGCGGuGCaccugcuGGGCCUGGuCGAcGUGGCCg -3'
miRNA:   3'- aUGCU-CGgu-----CUCGGACU-GCU-CAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 11099 0.66 0.811713
Target:  5'- gGCGcGCCAGGGCCgGGCuGAu--GCCu -3'
miRNA:   3'- aUGCuCGGUCUCGGaCUG-CUcauUGG- -5'
19005 5' -53.7 NC_004684.1 + 9871 0.66 0.847813
Target:  5'- gGCGGGCCAccGCCUcgggauccGGCGcAGgcACCu -3'
miRNA:   3'- aUGCUCGGUcuCGGA--------CUGC-UCauUGG- -5'
19005 5' -53.7 NC_004684.1 + 7631 0.71 0.556409
Target:  5'- --aGAGCCAGcucGCCgUGGCGggcguGGUGACCg -3'
miRNA:   3'- augCUCGGUCu--CGG-ACUGC-----UCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 16056 0.71 0.566167
Target:  5'- -uCGAGCCGGucacgauGGCgCUGAUGgccGGUGACCg -3'
miRNA:   3'- auGCUCGGUC-------UCG-GACUGC---UCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 8528 0.7 0.600073
Target:  5'- gGCGuGCUgugcGGGCCgGACGAGgugGACCu -3'
miRNA:   3'- aUGCuCGGu---CUCGGaCUGCUCa--UUGG- -5'
19005 5' -53.7 NC_004684.1 + 8058 0.69 0.64417
Target:  5'- aACG-GCCGG-GUCgUGGcCGAGUGGCCa -3'
miRNA:   3'- aUGCuCGGUCuCGG-ACU-GCUCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 33736 0.69 0.67716
Target:  5'- aGCGAcGCCaugcccggcgaGGGGUcgCUGACGAgGUAGCCg -3'
miRNA:   3'- aUGCU-CGG-----------UCUCG--GACUGCU-CAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 4253 0.67 0.752107
Target:  5'- -cUGAGCCGGuGCCcGGCGGaaUGGCCu -3'
miRNA:   3'- auGCUCGGUCuCGGaCUGCUc-AUUGG- -5'
19005 5' -53.7 NC_004684.1 + 19385 0.68 0.698957
Target:  5'- --gGAG-CAGGGCCUGACGcgcacugaguuGGUGACg -3'
miRNA:   3'- augCUCgGUCUCGGACUGC-----------UCAUUGg -5'
19005 5' -53.7 NC_004684.1 + 42077 0.69 0.666192
Target:  5'- aUACGccGCCAGGGCC-GACGAaccGCCg -3'
miRNA:   3'- -AUGCu-CGGUCUCGGaCUGCUcauUGG- -5'
19005 5' -53.7 NC_004684.1 + 66147 0.77 0.274398
Target:  5'- -cUGGGCCGGGGCCgGGCGAccGACCa -3'
miRNA:   3'- auGCUCGGUCUCGGaCUGCUcaUUGG- -5'
19005 5' -53.7 NC_004684.1 + 4777 0.68 0.720493
Target:  5'- cGCGucGCCAGcaagcGCCUcGGCGcGGUGGCCg -3'
miRNA:   3'- aUGCu-CGGUCu----CGGA-CUGC-UCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 18347 0.73 0.442562
Target:  5'- -cCGAGCCugccgaggaggaGGAGCCUG-CGccGGUGGCCg -3'
miRNA:   3'- auGCUCGG------------UCUCGGACuGC--UCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 61854 0.69 0.666192
Target:  5'- --aGGGUCAcAGCCUGGCGGG--ACCa -3'
miRNA:   3'- augCUCGGUcUCGGACUGCUCauUGG- -5'
19005 5' -53.7 NC_004684.1 + 54353 0.68 0.720493
Target:  5'- cGCGgaAGCCGaccGGCCcGGCGAcGUAACCg -3'
miRNA:   3'- aUGC--UCGGUc--UCGGaCUGCU-CAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 25873 0.67 0.802189
Target:  5'- cUGCGGuGCCAGGGCCU--CGuAGcgGGCCa -3'
miRNA:   3'- -AUGCU-CGGUCUCGGAcuGC-UCa-UUGG- -5'
19005 5' -53.7 NC_004684.1 + 4482 0.71 0.545624
Target:  5'- cACcGGCCAGGGCCUGGCccgccGUGGCa -3'
miRNA:   3'- aUGcUCGGUCUCGGACUGcu---CAUUGg -5'
19005 5' -53.7 NC_004684.1 + 22972 0.7 0.589094
Target:  5'- -cCGGGCCGGAcGCCa-ACGAgGUGGCCg -3'
miRNA:   3'- auGCUCGGUCU-CGGacUGCU-CAUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.