miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19005 5' -53.7 NC_004684.1 + 48577 1.09 0.001633
Target:  5'- cUACGAGCCAGAGCCUGACGAGUAACCc -3'
miRNA:   3'- -AUGCUCGGUCUCGGACUGCUCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 62910 0.77 0.247601
Target:  5'- gGCGGGCCAGGcCCUGGCcGGUGACg -3'
miRNA:   3'- aUGCUCGGUCUcGGACUGcUCAUUGg -5'
19005 5' -53.7 NC_004684.1 + 66147 0.77 0.274398
Target:  5'- -cUGGGCCGGGGCCgGGCGAccGACCa -3'
miRNA:   3'- auGCUCGGUCUCGGaCUGCUcaUUGG- -5'
19005 5' -53.7 NC_004684.1 + 27511 0.73 0.432853
Target:  5'- gGCGGGCCAGAGgCUGGCaagGAcGUGcgcaGCCg -3'
miRNA:   3'- aUGCUCGGUCUCgGACUG---CU-CAU----UGG- -5'
19005 5' -53.7 NC_004684.1 + 18347 0.73 0.442562
Target:  5'- -cCGAGCCugccgaggaggaGGAGCCUG-CGccGGUGGCCg -3'
miRNA:   3'- auGCUCGG------------UCUCGGACuGC--UCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 28803 0.72 0.513709
Target:  5'- -cCGAGCUGGuGCUcGACGGuGUGACCg -3'
miRNA:   3'- auGCUCGGUCuCGGaCUGCU-CAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 4482 0.71 0.545624
Target:  5'- cACcGGCCAGGGCCUGGCccgccGUGGCa -3'
miRNA:   3'- aUGcUCGGUCUCGGACUGcu---CAUUGg -5'
19005 5' -53.7 NC_004684.1 + 7631 0.71 0.556409
Target:  5'- --aGAGCCAGcucGCCgUGGCGggcguGGUGACCg -3'
miRNA:   3'- augCUCGGUCu--CGG-ACUGC-----UCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 16056 0.71 0.566167
Target:  5'- -uCGAGCCGGucacgauGGCgCUGAUGgccGGUGACCg -3'
miRNA:   3'- auGCUCGGUC-------UCG-GACUGC---UCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 61928 0.71 0.567254
Target:  5'- gUGCGGGCCAcggcacccgccGGGCCUGGugcacCGGauGUAACCg -3'
miRNA:   3'- -AUGCUCGGU-----------CUCGGACU-----GCU--CAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 15929 0.71 0.567254
Target:  5'- -cCGGcaCCGGAGCCUGGCGGG--GCCu -3'
miRNA:   3'- auGCUc-GGUCUCGGACUGCUCauUGG- -5'
19005 5' -53.7 NC_004684.1 + 38115 0.71 0.567254
Target:  5'- cGCGGuGCCGGAGCaaGugGAG--GCCg -3'
miRNA:   3'- aUGCU-CGGUCUCGgaCugCUCauUGG- -5'
19005 5' -53.7 NC_004684.1 + 26048 0.7 0.578152
Target:  5'- gGCG-GCCAGGGC--GGCGAGUucgaGGCCa -3'
miRNA:   3'- aUGCuCGGUCUCGgaCUGCUCA----UUGG- -5'
19005 5' -53.7 NC_004684.1 + 22972 0.7 0.589094
Target:  5'- -cCGGGCCGGAcGCCa-ACGAgGUGGCCg -3'
miRNA:   3'- auGCUCGGUCU-CGGacUGCU-CAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 8528 0.7 0.600073
Target:  5'- gGCGuGCUgugcGGGCCgGACGAGgugGACCu -3'
miRNA:   3'- aUGCuCGGu---CUCGGaCUGCUCa--UUGG- -5'
19005 5' -53.7 NC_004684.1 + 5870 0.7 0.611079
Target:  5'- gGCaGGCCGGgcagcaccAGCCUGAcCGGGUGGCg -3'
miRNA:   3'- aUGcUCGGUC--------UCGGACU-GCUCAUUGg -5'
19005 5' -53.7 NC_004684.1 + 19278 0.7 0.622105
Target:  5'- --gGAGCCGGAGCCaccUGGCGAcggAGCg -3'
miRNA:   3'- augCUCGGUCUCGG---ACUGCUca-UUGg -5'
19005 5' -53.7 NC_004684.1 + 19556 0.7 0.632035
Target:  5'- gGCGGuGCCAGgucuccgGGCCUGGCGucGUGcACCu -3'
miRNA:   3'- aUGCU-CGGUC-------UCGGACUGCu-CAU-UGG- -5'
19005 5' -53.7 NC_004684.1 + 64923 0.69 0.640862
Target:  5'- gGCGAcCCAGGuggcggcggugagcGCCUGGCGggcGGUGGCCc -3'
miRNA:   3'- aUGCUcGGUCU--------------CGGACUGC---UCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 8058 0.69 0.64417
Target:  5'- aACG-GCCGG-GUCgUGGcCGAGUGGCCa -3'
miRNA:   3'- aUGCuCGGUCuCGG-ACU-GCUCAUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.