miRNA display CGI


Results 41 - 60 of 175 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19006 5' -54.9 NC_004684.1 + 63460 0.66 0.76626
Target:  5'- cGCCGCCcaguuccgGCAuucgGGGGCG-CGAgGCCu -3'
miRNA:   3'- aCGGCGGa-------UGU----UCCUGUaGCUgUGGc -5'
19006 5' -54.9 NC_004684.1 + 58880 0.66 0.76626
Target:  5'- aGCCGCC-ACAAucccaGCA-CGGCACCGu -3'
miRNA:   3'- aCGGCGGaUGUUcc---UGUaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 30956 0.66 0.76626
Target:  5'- --aCGCCaGCAGGGuCGUCGucCACCa -3'
miRNA:   3'- acgGCGGaUGUUCCuGUAGCu-GUGGc -5'
19006 5' -54.9 NC_004684.1 + 23946 0.66 0.76626
Target:  5'- cUGCCGCCccgccGCAccGACcUCGGCcucGCCGg -3'
miRNA:   3'- -ACGGCGGa----UGUucCUGuAGCUG---UGGC- -5'
19006 5' -54.9 NC_004684.1 + 4806 0.66 0.76626
Target:  5'- gGCCGaCCgcaacgGCAAGG-UGUCGAUuCCGg -3'
miRNA:   3'- aCGGC-GGa-----UGUUCCuGUAGCUGuGGC- -5'
19006 5' -54.9 NC_004684.1 + 1122 0.66 0.76626
Target:  5'- gGCCGUCcGCuGGGA---CGACGCCGc -3'
miRNA:   3'- aCGGCGGaUGuUCCUguaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 20230 0.66 0.765255
Target:  5'- gGCCGCCgcUACGGugcuccuGGGCAcCGGgGCCGc -3'
miRNA:   3'- aCGGCGG--AUGUU-------CCUGUaGCUgUGGC- -5'
19006 5' -54.9 NC_004684.1 + 52737 0.67 0.756149
Target:  5'- cGCUGuCCU-CcAGGuCGUCGugGCCGc -3'
miRNA:   3'- aCGGC-GGAuGuUCCuGUAGCugUGGC- -5'
19006 5' -54.9 NC_004684.1 + 38884 0.67 0.756149
Target:  5'- cGCCGCC-ACGcuGGACAgCGACGacuaCGa -3'
miRNA:   3'- aCGGCGGaUGUu-CCUGUaGCUGUg---GC- -5'
19006 5' -54.9 NC_004684.1 + 9853 0.67 0.756149
Target:  5'- cGCCGCCggugaGCugccgccGGAUccCGACGCCGc -3'
miRNA:   3'- aCGGCGGa----UGuu-----CCUGuaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 15647 0.67 0.756149
Target:  5'- uUGCUGgacgaCUACGAGGuaggccucuccaACGUCGugGCCa -3'
miRNA:   3'- -ACGGCg----GAUGUUCC------------UGUAGCugUGGc -5'
19006 5' -54.9 NC_004684.1 + 21443 0.67 0.756149
Target:  5'- gGCCGCCguCGAGuacGugGUgGACGCCa -3'
miRNA:   3'- aCGGCGGauGUUC---CugUAgCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 18929 0.67 0.756149
Target:  5'- cGCUGUCgguCGAGGAgAacUCGGcCACCGa -3'
miRNA:   3'- aCGGCGGau-GUUCCUgU--AGCU-GUGGC- -5'
19006 5' -54.9 NC_004684.1 + 30712 0.67 0.75513
Target:  5'- gGCaCGCCaACGAugcuggcGGGCAUCGcauCGCCGu -3'
miRNA:   3'- aCG-GCGGaUGUU-------CCUGUAGCu--GUGGC- -5'
19006 5' -54.9 NC_004684.1 + 37146 0.67 0.75309
Target:  5'- cGCCGCCaGuucugggagcgcgcCGAGGGCcacGUCG-CGCCGa -3'
miRNA:   3'- aCGGCGGaU--------------GUUCCUG---UAGCuGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 15962 0.67 0.745913
Target:  5'- aUGCagGCCUugGuGaGGCcgUGACACCGg -3'
miRNA:   3'- -ACGg-CGGAugUuC-CUGuaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 41908 0.67 0.745913
Target:  5'- gGCCGaCCg--GAcGACAUCGugGCCGu -3'
miRNA:   3'- aCGGC-GGaugUUcCUGUAGCugUGGC- -5'
19006 5' -54.9 NC_004684.1 + 20864 0.67 0.745913
Target:  5'- uUGUCaCCgaggGCAAGGACcgugCGGCGCUGa -3'
miRNA:   3'- -ACGGcGGa---UGUUCCUGua--GCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 48459 0.67 0.745913
Target:  5'- cGCCGCUacauggACAAGGGCcugGUCugauGCGCCGc -3'
miRNA:   3'- aCGGCGGa-----UGUUCCUG---UAGc---UGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 609 0.67 0.745913
Target:  5'- cGCaGCC-ACAAGGGCggCGAgUACCGc -3'
miRNA:   3'- aCGgCGGaUGUUCCUGuaGCU-GUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.