miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19007 5' -52 NC_004684.1 + 7874 0.66 0.91589
Target:  5'- aAGUCGGAACCggugagcacaCGUcAGCGUGCcCUGg -3'
miRNA:   3'- -UCAGCUUUGGaa--------GCA-UCGCGUGcGAC- -5'
19007 5' -52 NC_004684.1 + 7625 0.66 0.915889
Target:  5'- cGGUCGAGAgCCagcucgcCGUGGCGgGCGUg- -3'
miRNA:   3'- -UCAGCUUU-GGaa-----GCAUCGCgUGCGac -5'
19007 5' -52 NC_004684.1 + 34545 0.66 0.915258
Target:  5'- uGUCGAGGCCaUgGccAGCuacgagaGCGCGCUGg -3'
miRNA:   3'- uCAGCUUUGGaAgCa-UCG-------CGUGCGAC- -5'
19007 5' -52 NC_004684.1 + 52264 0.66 0.909448
Target:  5'- cGUCGAAGCUggcgUUGUGGaacaccaGCuuGCUGg -3'
miRNA:   3'- uCAGCUUUGGa---AGCAUCg------CGugCGAC- -5'
19007 5' -52 NC_004684.1 + 26678 0.66 0.902728
Target:  5'- -cUCGggGCCaUCGUcaaccugcuGGUGCGCGUg- -3'
miRNA:   3'- ucAGCuuUGGaAGCA---------UCGCGUGCGac -5'
19007 5' -52 NC_004684.1 + 31370 0.66 0.902728
Target:  5'- cGGUCaGAuGCCg--GUAGUGCAUGCUc -3'
miRNA:   3'- -UCAG-CUuUGGaagCAUCGCGUGCGAc -5'
19007 5' -52 NC_004684.1 + 54424 0.66 0.902728
Target:  5'- gGGUCG-AGCCUcaCGc-GCGCGCGCg- -3'
miRNA:   3'- -UCAGCuUUGGAa-GCauCGCGUGCGac -5'
19007 5' -52 NC_004684.1 + 10916 0.66 0.902728
Target:  5'- uGGUCGGugAACCcaccagCGacgGGCGCAUGCUc -3'
miRNA:   3'- -UCAGCU--UUGGaa----GCa--UCGCGUGCGAc -5'
19007 5' -52 NC_004684.1 + 20620 0.66 0.899963
Target:  5'- cGGUCGAcgguuccugcgccGCCUgCGUc-CGCACGCUGg -3'
miRNA:   3'- -UCAGCUu------------UGGAaGCAucGCGUGCGAC- -5'
19007 5' -52 NC_004684.1 + 43787 0.66 0.895732
Target:  5'- cGUCGugcuuGGCgUUCuuacggugGUGGCGCGCGCg- -3'
miRNA:   3'- uCAGCu----UUGgAAG--------CAUCGCGUGCGac -5'
19007 5' -52 NC_004684.1 + 36928 0.66 0.888464
Target:  5'- cGGUCGAGGCCgg-GUGGacaCGCcUGCUGg -3'
miRNA:   3'- -UCAGCUUUGGaagCAUC---GCGuGCGAC- -5'
19007 5' -52 NC_004684.1 + 39172 0.67 0.880929
Target:  5'- gGGUgGGcGGCCag-GUAGCGCAgGCUGg -3'
miRNA:   3'- -UCAgCU-UUGGaagCAUCGCGUgCGAC- -5'
19007 5' -52 NC_004684.1 + 9739 0.67 0.880929
Target:  5'- gGGUCcAGGCCUcaaUCGgGGUGUACGCg- -3'
miRNA:   3'- -UCAGcUUUGGA---AGCaUCGCGUGCGac -5'
19007 5' -52 NC_004684.1 + 19045 0.67 0.880929
Target:  5'- --cCGAGACCgccCGUGGauccaGCGCGCUc -3'
miRNA:   3'- ucaGCUUUGGaa-GCAUCg----CGUGCGAc -5'
19007 5' -52 NC_004684.1 + 4564 0.67 0.880929
Target:  5'- uGcCGAGGCCaUCGaGGCGC-UGCUGc -3'
miRNA:   3'- uCaGCUUUGGaAGCaUCGCGuGCGAC- -5'
19007 5' -52 NC_004684.1 + 17852 0.67 0.873132
Target:  5'- aAGUCGGccACCgcgcacacCGccgGGUGCACGCUGg -3'
miRNA:   3'- -UCAGCUu-UGGaa------GCa--UCGCGUGCGAC- -5'
19007 5' -52 NC_004684.1 + 62928 0.67 0.86508
Target:  5'- cGGUgaCGAAGCCgaccagcgCGcGGCGCGCGCc- -3'
miRNA:   3'- -UCA--GCUUUGGaa------GCaUCGCGUGCGac -5'
19007 5' -52 NC_004684.1 + 12582 0.68 0.839466
Target:  5'- cGGUCGAAcucaGCCagggucaUCGgcuccUGGCGCGCGCUc -3'
miRNA:   3'- -UCAGCUU----UGGa------AGC-----AUCGCGUGCGAc -5'
19007 5' -52 NC_004684.1 + 2952 0.68 0.83047
Target:  5'- --cCGAGGCCaUCGgcGCGC-UGCUGu -3'
miRNA:   3'- ucaGCUUUGGaAGCauCGCGuGCGAC- -5'
19007 5' -52 NC_004684.1 + 42235 0.68 0.826812
Target:  5'- cGUCGgcACCcaugcccuuuuucUUGUuGCGCGCGCUGg -3'
miRNA:   3'- uCAGCuuUGGa------------AGCAuCGCGUGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.