miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19008 5' -63.6 NC_004684.1 + 51305 0.66 0.354362
Target:  5'- aCGGUgCCAGGaacuCCCGGUCaccggccaucAGCGCCa -3'
miRNA:   3'- gGCCG-GGUCCac--GGGCCAG----------UCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 25351 0.66 0.354362
Target:  5'- gUCGGCCauCAGG-GCCucccauucguCGGUCGGUACgGg -3'
miRNA:   3'- -GGCCGG--GUCCaCGG----------GCCAGUCGUGgC- -5'
19008 5' -63.6 NC_004684.1 + 55476 0.67 0.349684
Target:  5'- aCGGCCCuggcugucgguGGUGCcgcgcacguugaaucCCGGUguguucaccgcCAGCGCCGc -3'
miRNA:   3'- gGCCGGGu----------CCACG---------------GGCCA-----------GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 24779 0.67 0.346591
Target:  5'- gCGGCgggggAGGUGCCgGGUCgaaGGUGCCGu -3'
miRNA:   3'- gGCCGgg---UCCACGGgCCAG---UCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 50331 0.67 0.346591
Target:  5'- cCCGGCCaggCGGGcgGCCUccuuGGcaUCGGCAUCGg -3'
miRNA:   3'- -GGCCGG---GUCCa-CGGG----CC--AGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 3180 0.67 0.346591
Target:  5'- gCCGuGuCCCAGGUGUcgauCCGG-CA-CACCGg -3'
miRNA:   3'- -GGC-C-GGGUCCACG----GGCCaGUcGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 52494 0.67 0.346591
Target:  5'- aUGGCCacgaAGGUGUCCaGGUUcugcggacgGGUGCCGg -3'
miRNA:   3'- gGCCGGg---UCCACGGG-CCAG---------UCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 58755 0.67 0.346591
Target:  5'- aCGGCggGGGUGCCgaGGaUCGGCgguGCCGg -3'
miRNA:   3'- gGCCGggUCCACGGg-CC-AGUCG---UGGC- -5'
19008 5' -63.6 NC_004684.1 + 36131 0.67 0.341986
Target:  5'- gCGGuUCCAGGUGuCCCGGaggccgucgaacacaUCGGCaauggcgucACCGg -3'
miRNA:   3'- gGCC-GGGUCCAC-GGGCC---------------AGUCG---------UGGC- -5'
19008 5' -63.6 NC_004684.1 + 59864 0.67 0.338942
Target:  5'- aCGGCggCCAGGUcgGUCCGGgCAGguCCa -3'
miRNA:   3'- gGCCG--GGUCCA--CGGGCCaGUCguGGc -5'
19008 5' -63.6 NC_004684.1 + 65308 0.67 0.338942
Target:  5'- gCGGCCUcgcuGUGCaccaCGGcCAGCGCCa -3'
miRNA:   3'- gGCCGGGuc--CACGg---GCCaGUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 65762 0.67 0.338942
Target:  5'- gCCGGuaCCCGGuUGCgCCGGUgcaGGUGCCGg -3'
miRNA:   3'- -GGCC--GGGUCcACG-GGCCAg--UCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 42214 0.67 0.338942
Target:  5'- gUGGCCgAcGUGgCCGccgguGUCGGCACCGg -3'
miRNA:   3'- gGCCGGgUcCACgGGC-----CAGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 63978 0.67 0.338942
Target:  5'- gCGGCCagcggugccaGGGUGCCguUGGUCucgauguGCACCu -3'
miRNA:   3'- gGCCGGg---------UCCACGG--GCCAGu------CGUGGc -5'
19008 5' -63.6 NC_004684.1 + 49361 0.67 0.333661
Target:  5'- -aGGCCCAGGcuguccauggccuUGCCgaUguugccgccguacucGGUCAGCGCCa -3'
miRNA:   3'- ggCCGGGUCC-------------ACGG--G---------------CCAGUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 6783 0.67 0.331416
Target:  5'- aCGuGCgCCGGGUGaCCGGcCugcGCACCGu -3'
miRNA:   3'- gGC-CG-GGUCCACgGGCCaGu--CGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 40100 0.67 0.331416
Target:  5'- -aGGCCaccgaacaGGGUgcugaucaGCCCGGUCAccGUGCCGa -3'
miRNA:   3'- ggCCGGg-------UCCA--------CGGGCCAGU--CGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 38757 0.67 0.331416
Target:  5'- aCCGGaaCGGGUaGUCCaucGUCGGCACCu -3'
miRNA:   3'- -GGCCggGUCCA-CGGGc--CAGUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 33873 0.67 0.331416
Target:  5'- uUCGGCCUAccaggcGGUGCgggcggugCCGGUgGGCGCgGa -3'
miRNA:   3'- -GGCCGGGU------CCACG--------GGCCAgUCGUGgC- -5'
19008 5' -63.6 NC_004684.1 + 17232 0.67 0.331416
Target:  5'- uUGGCauCCAGGUGCUgacgaaaugaCGG-CGGCGCUGg -3'
miRNA:   3'- gGCCG--GGUCCACGG----------GCCaGUCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.