miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19008 5' -63.6 NC_004684.1 + 10496 0.66 0.38583
Target:  5'- cCCGGCCgacgcacUGGGccGCCgaCGGUCAGCGCg- -3'
miRNA:   3'- -GGCCGG-------GUCCa-CGG--GCCAGUCGUGgc -5'
19008 5' -63.6 NC_004684.1 + 27959 0.66 0.38583
Target:  5'- cUCGGCCUGGG-GCCaCGGUCcuuGUcgcguaucaaacuGCCGa -3'
miRNA:   3'- -GGCCGGGUCCaCGG-GCCAGu--CG-------------UGGC- -5'
19008 5' -63.6 NC_004684.1 + 48121 0.66 0.378406
Target:  5'- uCgGGUCCAccGU-CCCGGUCGGC-CCGg -3'
miRNA:   3'- -GgCCGGGUc-CAcGGGCCAGUCGuGGC- -5'
19008 5' -63.6 NC_004684.1 + 49853 0.66 0.377587
Target:  5'- gCGGUCCuGGUaggcgaccacgucGUCCGGcgUGGCACCGc -3'
miRNA:   3'- gGCCGGGuCCA-------------CGGGCCa-GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 31935 0.66 0.37351
Target:  5'- uCCGGCCCGGccgcaacggucgcccGcUGUCCGG-CGGgACCa -3'
miRNA:   3'- -GGCCGGGUC---------------C-ACGGGCCaGUCgUGGc -5'
19008 5' -63.6 NC_004684.1 + 35236 0.66 0.37351
Target:  5'- gCCGuaCCuGGUgccGCCCGGUUcgacguucuacuucuGGUACCGg -3'
miRNA:   3'- -GGCcgGGuCCA---CGGGCCAG---------------UCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 56675 0.66 0.370271
Target:  5'- gUCGGCCUGGcUGCCCuGcCGGUugCGa -3'
miRNA:   3'- -GGCCGGGUCcACGGGcCaGUCGugGC- -5'
19008 5' -63.6 NC_004684.1 + 10155 0.66 0.370271
Target:  5'- gCCcGCCCAGGUggggcguuuGUCCGGcaggcUgAGCACCa -3'
miRNA:   3'- -GGcCGGGUCCA---------CGGGCC-----AgUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 31858 0.66 0.370271
Target:  5'- gCGGCuCCucGUGCCCgcacucGGUgcagUAGCGCCGg -3'
miRNA:   3'- gGCCG-GGucCACGGG------CCA----GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 11812 0.66 0.370271
Target:  5'- aCC-GCCUuGGUGCCUGGaccccCGGcCACCGg -3'
miRNA:   3'- -GGcCGGGuCCACGGGCCa----GUC-GUGGC- -5'
19008 5' -63.6 NC_004684.1 + 52272 0.66 0.370271
Target:  5'- -aGGCCCAGcGU-CCCGGUgaCGGCAaggUCGg -3'
miRNA:   3'- ggCCGGGUC-CAcGGGCCA--GUCGU---GGC- -5'
19008 5' -63.6 NC_004684.1 + 21064 0.66 0.370271
Target:  5'- gCCGGUgcugaCCGGGcaccugGgCCGGUCAGUGCgGg -3'
miRNA:   3'- -GGCCG-----GGUCCa-----CgGGCCAGUCGUGgC- -5'
19008 5' -63.6 NC_004684.1 + 39035 0.66 0.370271
Target:  5'- aCGGCUCGgcGGUGUCCauUguGCGCCGg -3'
miRNA:   3'- gGCCGGGU--CCACGGGccAguCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 57305 0.66 0.370271
Target:  5'- cCCGGCCagcccUGCCCGGUCGaCugGCCGu -3'
miRNA:   3'- -GGCCGGgucc-ACGGGCCAGUcG--UGGC- -5'
19008 5' -63.6 NC_004684.1 + 8441 0.66 0.368658
Target:  5'- gCCGGgCCAGGgaaccugacucCCCGGUgcGCGCCa -3'
miRNA:   3'- -GGCCgGGUCCac---------GGGCCAguCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 66853 0.66 0.362255
Target:  5'- gCGGCCUcGaccGCCUGGccagcacgUCAGCGCCGg -3'
miRNA:   3'- gGCCGGGuCca-CGGGCC--------AGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 47689 0.66 0.362255
Target:  5'- gCCGuCCCAGGUcuugGCUCGGcCAggccuugccgccGCGCCGg -3'
miRNA:   3'- -GGCcGGGUCCA----CGGGCCaGU------------CGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 38300 0.66 0.362255
Target:  5'- aCGGCuCCAGGccaggcucaucUGCUCGGUgGGCaggaACUGg -3'
miRNA:   3'- gGCCG-GGUCC-----------ACGGGCCAgUCG----UGGC- -5'
19008 5' -63.6 NC_004684.1 + 63438 0.66 0.361461
Target:  5'- cCUGGCCgGGGUcGUCCGGUgCGGagaacguCACCu -3'
miRNA:   3'- -GGCCGGgUCCA-CGGGCCA-GUC-------GUGGc -5'
19008 5' -63.6 NC_004684.1 + 51305 0.66 0.354362
Target:  5'- aCGGUgCCAGGaacuCCCGGUCaccggccaucAGCGCCa -3'
miRNA:   3'- gGCCG-GGUCCac--GGGCCAG----------UCGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.