miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19008 5' -63.6 NC_004684.1 + 6162 0.68 0.302552
Target:  5'- gCGGCggCCAGcGUGCggCGGUaGGCACCGg -3'
miRNA:   3'- gGCCG--GGUC-CACGg-GCCAgUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 6783 0.67 0.331416
Target:  5'- aCGuGCgCCGGGUGaCCGGcCugcGCACCGu -3'
miRNA:   3'- gGC-CG-GGUCCACgGGCCaGu--CGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 7317 0.66 0.38666
Target:  5'- cCCGGCCauggccgacGcGUGCUCGGUguGCaacccGCCGg -3'
miRNA:   3'- -GGCCGGgu-------C-CACGGGCCAguCG-----UGGC- -5'
19008 5' -63.6 NC_004684.1 + 7561 0.67 0.324015
Target:  5'- aCCGGcCCCGGGUgGCgCUGGUgcggcuggugcgCGGCAacCCGg -3'
miRNA:   3'- -GGCC-GGGUCCA-CG-GGCCA------------GUCGU--GGC- -5'
19008 5' -63.6 NC_004684.1 + 7648 0.67 0.309583
Target:  5'- gCGGgCguGGUGaCCgGGUCGGCGgCCu -3'
miRNA:   3'- gGCCgGguCCAC-GGgCCAGUCGU-GGc -5'
19008 5' -63.6 NC_004684.1 + 8291 0.68 0.288862
Target:  5'- aCGGCaaCCcGGUGCCggagUGGUUGGCGCUGa -3'
miRNA:   3'- gGCCG--GGuCCACGG----GCCAGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 8441 0.66 0.368658
Target:  5'- gCCGGgCCAGGgaaccugacucCCCGGUgcGCGCCa -3'
miRNA:   3'- -GGCCgGGUCCac---------GGGCCAguCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 8618 0.66 0.403521
Target:  5'- --aGCCC-GGUGCaCCGGcaccgccgauccUCGGCACCc -3'
miRNA:   3'- ggcCGGGuCCACG-GGCC------------AGUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 8670 0.68 0.300467
Target:  5'- cCCGGUgcggCCAGGUGCCUguggccgugcgugaGGUCuGUuaGCCGc -3'
miRNA:   3'- -GGCCG----GGUCCACGGG--------------CCAGuCG--UGGC- -5'
19008 5' -63.6 NC_004684.1 + 9492 0.69 0.262951
Target:  5'- cCCGGCCaccuucaGCCCGGccaccagcCAGCACCGg -3'
miRNA:   3'- -GGCCGGgucca--CGGGCCa-------GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 10155 0.66 0.370271
Target:  5'- gCCcGCCCAGGUggggcguuuGUCCGGcaggcUgAGCACCa -3'
miRNA:   3'- -GGcCGGGUCCA---------CGGGCC-----AgUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 10224 0.71 0.191651
Target:  5'- gCCuGCCCAGGUGCgCGaG-CAGCugGCCGu -3'
miRNA:   3'- -GGcCGGGUCCACGgGC-CaGUCG--UGGC- -5'
19008 5' -63.6 NC_004684.1 + 10496 0.66 0.38583
Target:  5'- cCCGGCCgacgcacUGGGccGCCgaCGGUCAGCGCg- -3'
miRNA:   3'- -GGCCGG-------GUCCa-CGG--GCCAGUCGUGgc -5'
19008 5' -63.6 NC_004684.1 + 10658 0.67 0.331416
Target:  5'- gCCGGUUCccGUGCUggcgCGGcaUCAGCACCGc -3'
miRNA:   3'- -GGCCGGGucCACGG----GCC--AGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 11071 0.68 0.282202
Target:  5'- aCGGCa-AGGUGCUCGGUUcgGGCuACCu -3'
miRNA:   3'- gGCCGggUCCACGGGCCAG--UCG-UGGc -5'
19008 5' -63.6 NC_004684.1 + 11589 0.69 0.23896
Target:  5'- aCCaGCCCGccGGUgcGCCUGGacgaCGGCACCGa -3'
miRNA:   3'- -GGcCGGGU--CCA--CGGGCCa---GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 11812 0.66 0.370271
Target:  5'- aCC-GCCUuGGUGCCUGGaccccCGGcCACCGg -3'
miRNA:   3'- -GGcCGGGuCCACGGGCCa----GUC-GUGGC- -5'
19008 5' -63.6 NC_004684.1 + 13152 0.67 0.324015
Target:  5'- cCCGGCgC-GGUGCCCuGGaaCAGCugCu -3'
miRNA:   3'- -GGCCGgGuCCACGGG-CCa-GUCGugGc -5'
19008 5' -63.6 NC_004684.1 + 13676 0.68 0.288862
Target:  5'- aCGGUCCAggacauGGUGgCCGGUUcgGGCacGCCGa -3'
miRNA:   3'- gGCCGGGU------CCACgGGCCAG--UCG--UGGC- -5'
19008 5' -63.6 NC_004684.1 + 13720 0.72 0.160732
Target:  5'- cCCGaCCCAGGcGCUguCGGUCGGUGCCa -3'
miRNA:   3'- -GGCcGGGUCCaCGG--GCCAGUCGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.