miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19008 5' -63.6 NC_004684.1 + 370 0.67 0.324015
Target:  5'- gCCaGGCCaucguGGUG-CCGGUCAGgauCACCGc -3'
miRNA:   3'- -GG-CCGGgu---CCACgGGCCAGUC---GUGGC- -5'
19008 5' -63.6 NC_004684.1 + 476 0.69 0.262951
Target:  5'- aCCGGgCCAGcGaGgUCGG-CAGCACCGa -3'
miRNA:   3'- -GGCCgGGUC-CaCgGGCCaGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 534 0.71 0.177806
Target:  5'- cCUGGaCCCGGcGaaagGCCUGGagGGCACCGg -3'
miRNA:   3'- -GGCC-GGGUC-Ca---CGGGCCagUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 631 0.69 0.262951
Target:  5'- aCCGcGCCgAGGUcGCCgGGgugCuGUACCGg -3'
miRNA:   3'- -GGC-CGGgUCCA-CGGgCCa--GuCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 1226 0.74 0.11206
Target:  5'- gUCGGCCUcGGcgGCCUGGUCGGuCGCCc -3'
miRNA:   3'- -GGCCGGGuCCa-CGGGCCAGUC-GUGGc -5'
19008 5' -63.6 NC_004684.1 + 1470 0.74 0.109169
Target:  5'- aCCGGgCCGGacGUGCCCGGUgCGGCgGCCc -3'
miRNA:   3'- -GGCCgGGUC--CACGGGCCA-GUCG-UGGc -5'
19008 5' -63.6 NC_004684.1 + 1575 0.73 0.130959
Target:  5'- gCCGGUgccuCCGGGUcaccuGCCCGGUgcaCGGCAUCGg -3'
miRNA:   3'- -GGCCG----GGUCCA-----CGGGCCA---GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 1923 0.7 0.211575
Target:  5'- cCCGGCCUgccGG-GCCUGGUacCGGCGCaCGg -3'
miRNA:   3'- -GGCCGGGu--CCaCGGGCCA--GUCGUG-GC- -5'
19008 5' -63.6 NC_004684.1 + 2702 0.7 0.196472
Target:  5'- cCCGGCCUggccGGUGCCgGGggCAaguGCGCCa -3'
miRNA:   3'- -GGCCGGGu---CCACGGgCCa-GU---CGUGGc -5'
19008 5' -63.6 NC_004684.1 + 2851 0.7 0.201399
Target:  5'- cCUGGaCCaCGGGUuCCUGGUC-GCGCCGg -3'
miRNA:   3'- -GGCC-GG-GUCCAcGGGCCAGuCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 3180 0.67 0.346591
Target:  5'- gCCGuGuCCCAGGUGUcgauCCGG-CA-CACCGg -3'
miRNA:   3'- -GGC-C-GGGUCCACG----GGCCaGUcGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 3638 0.68 0.275663
Target:  5'- gCGcGCCaccuGGGUcaugCCGGUCGGCACCGa -3'
miRNA:   3'- gGC-CGGg---UCCAcg--GGCCAGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 3653 0.71 0.193567
Target:  5'- gCC-GCCC-GGUGCCgGGUCaucguacgguggcccGGCACCGc -3'
miRNA:   3'- -GGcCGGGuCCACGGgCCAG---------------UCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 4032 0.68 0.295645
Target:  5'- gUCGGCCgCucGGUGCgCUGGgCGGuCACCGg -3'
miRNA:   3'- -GGCCGG-Gu-CCACG-GGCCaGUC-GUGGC- -5'
19008 5' -63.6 NC_004684.1 + 4174 0.66 0.395033
Target:  5'- aUGGCCC-GGUugcGCCCGGcgGGCGCgGu -3'
miRNA:   3'- gGCCGGGuCCA---CGGGCCagUCGUGgC- -5'
19008 5' -63.6 NC_004684.1 + 4887 0.79 0.044033
Target:  5'- gCGGCUCAGGcgGCCUGGUCGcCACCGg -3'
miRNA:   3'- gGCCGGGUCCa-CGGGCCAGUcGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 5457 0.69 0.262951
Target:  5'- aCCaGGCCCggcGGGUGCCgUGGcCcGCACCc -3'
miRNA:   3'- -GG-CCGGG---UCCACGG-GCCaGuCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 5686 0.69 0.250719
Target:  5'- gUGG-CCGGG-GCCCGGccugcccaCGGCACCGa -3'
miRNA:   3'- gGCCgGGUCCaCGGGCCa-------GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 5774 0.66 0.38666
Target:  5'- aCUGGCCCAaGUGCgUGGUguGCggGCgGg -3'
miRNA:   3'- -GGCCGGGUcCACGgGCCAguCG--UGgC- -5'
19008 5' -63.6 NC_004684.1 + 5949 0.66 0.395033
Target:  5'- gCGGUCCAaccuGGccGCgCCGGUgAGCgACCGg -3'
miRNA:   3'- gGCCGGGU----CCa-CG-GGCCAgUCG-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.