miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19008 5' -63.6 NC_004684.1 + 66853 0.66 0.362255
Target:  5'- gCGGCCUcGaccGCCUGGccagcacgUCAGCGCCGg -3'
miRNA:   3'- gGCCGGGuCca-CGGGCC--------AGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 66776 0.67 0.308874
Target:  5'- gUCGGCCaggucguccagguCAGGcgGCCCGGaggUCAGCuCCa -3'
miRNA:   3'- -GGCCGG-------------GUCCa-CGGGCC---AGUCGuGGc -5'
19008 5' -63.6 NC_004684.1 + 66664 0.7 0.216827
Target:  5'- gCGGCCCGgucaccggcGGUGCCCaGGUCuuccCACCc -3'
miRNA:   3'- gGCCGGGU---------CCACGGG-CCAGuc--GUGGc -5'
19008 5' -63.6 NC_004684.1 + 66287 0.7 0.206433
Target:  5'- aCGGCCacguugCGGGUGCCCGa-CGGCAgCGg -3'
miRNA:   3'- gGCCGG------GUCCACGGGCcaGUCGUgGC- -5'
19008 5' -63.6 NC_004684.1 + 66227 0.68 0.281542
Target:  5'- gCGGCUCGGcaccaaaGUGCaCGGUCGGCACg- -3'
miRNA:   3'- gGCCGGGUC-------CACGgGCCAGUCGUGgc -5'
19008 5' -63.6 NC_004684.1 + 66026 0.66 0.403521
Target:  5'- gUCGGCCaGGGUGUuggcgUUGGUCAGCcagACCc -3'
miRNA:   3'- -GGCCGGgUCCACG-----GGCCAGUCG---UGGc -5'
19008 5' -63.6 NC_004684.1 + 65813 0.71 0.177806
Target:  5'- aCCGGgC-AGGUGaCCCGGa-GGCACCGg -3'
miRNA:   3'- -GGCCgGgUCCAC-GGGCCagUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 65762 0.67 0.338942
Target:  5'- gCCGGuaCCCGGuUGCgCCGGUgcaGGUGCCGg -3'
miRNA:   3'- -GGCC--GGGUCcACG-GGCCAg--UCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 65712 0.68 0.278264
Target:  5'- uCgGGCCCGGGUGCgUCGGUUccagggagucgagcuGGCcCCa -3'
miRNA:   3'- -GgCCGGGUCCACG-GGCCAG---------------UCGuGGc -5'
19008 5' -63.6 NC_004684.1 + 65308 0.67 0.338942
Target:  5'- gCGGCCUcgcuGUGCaccaCGGcCAGCGCCa -3'
miRNA:   3'- gGCCGGGuc--CACGg---GCCaGUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 65114 0.67 0.309583
Target:  5'- gUGGCCCAGGcuggcggcaaUGCCCGccgCcGCGCUGa -3'
miRNA:   3'- gGCCGGGUCC----------ACGGGCca-GuCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 65073 0.68 0.295645
Target:  5'- aCGGCgUGGucaccgacGUGCacggCGGUCAGCACCGc -3'
miRNA:   3'- gGCCGgGUC--------CACGg---GCCAGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 64921 0.69 0.262951
Target:  5'- gCGGCgacCCAGGUGgCggCGGUgAGCGCCu -3'
miRNA:   3'- gGCCG---GGUCCACgG--GCCAgUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 64548 0.66 0.392509
Target:  5'- gCGGCCUuGGUGaCCgGGUUGGUgcgcaggaucguguACCGg -3'
miRNA:   3'- gGCCGGGuCCAC-GGgCCAGUCG--------------UGGC- -5'
19008 5' -63.6 NC_004684.1 + 64454 0.7 0.206433
Target:  5'- aUGGCCUcGGUGCUCGGcaccggaGGCACCu -3'
miRNA:   3'- gGCCGGGuCCACGGGCCag-----UCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 63978 0.67 0.338942
Target:  5'- gCGGCCagcggugccaGGGUGCCguUGGUCucgauguGCACCu -3'
miRNA:   3'- gGCCGGg---------UCCACGG--GCCAGu------CGUGGc -5'
19008 5' -63.6 NC_004684.1 + 63886 0.73 0.121167
Target:  5'- uCgGGCCCAgcGGUGCCagguGGUCcaGGUACCGg -3'
miRNA:   3'- -GgCCGGGU--CCACGGg---CCAG--UCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 63438 0.66 0.361461
Target:  5'- cCUGGCCgGGGUcGUCCGGUgCGGagaacguCACCu -3'
miRNA:   3'- -GGCCGGgUCCA-CGGGCCA-GUC-------GUGGc -5'
19008 5' -63.6 NC_004684.1 + 61557 0.66 0.403521
Target:  5'- uUGGUCCGGGUGC--GG-CAGCACUc -3'
miRNA:   3'- gGCCGGGUCCACGggCCaGUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 61443 0.72 0.148911
Target:  5'- aCCGGCgcggCCAGGUuggaccGCCCGGUggcCAGCGCgGc -3'
miRNA:   3'- -GGCCG----GGUCCA------CGGGCCA---GUCGUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.