Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19008 | 5' | -63.6 | NC_004684.1 | + | 50048 | 0.66 | 0.354362 |
Target: 5'- cCUGGCuCCAGGccaggaaCCGGUCgAGCugCGc -3' miRNA: 3'- -GGCCG-GGUCCacg----GGCCAG-UCGugGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 66026 | 0.66 | 0.403521 |
Target: 5'- gUCGGCCaGGGUGUuggcgUUGGUCAGCcagACCc -3' miRNA: 3'- -GGCCGGgUCCACG-----GGCCAGUCG---UGGc -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 51305 | 0.66 | 0.354362 |
Target: 5'- aCGGUgCCAGGaacuCCCGGUCaccggccaucAGCGCCa -3' miRNA: 3'- gGCCG-GGUCCac--GGGCCAG----------UCGUGGc -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 23001 | 0.66 | 0.38666 |
Target: 5'- aCGGCCUGGGccgacugGCCgCcGUCGGCAgCGa -3' miRNA: 3'- gGCCGGGUCCa------CGG-GcCAGUCGUgGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 57305 | 0.66 | 0.370271 |
Target: 5'- cCCGGCCagcccUGCCCGGUCGaCugGCCGu -3' miRNA: 3'- -GGCCGGgucc-ACGGGCCAGUcG--UGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 27023 | 0.66 | 0.38666 |
Target: 5'- gCCaGGCaCCGGGUG-CCGGU-GGCAUUGu -3' miRNA: 3'- -GG-CCG-GGUCCACgGGCCAgUCGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 30961 | 0.66 | 0.395033 |
Target: 5'- aCUcGCUguGGaacgGCgUGGUCGGCACCGu -3' miRNA: 3'- -GGcCGGguCCa---CGgGCCAGUCGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 21064 | 0.66 | 0.370271 |
Target: 5'- gCCGGUgcugaCCGGGcaccugGgCCGGUCAGUGCgGg -3' miRNA: 3'- -GGCCG-----GGUCCa-----CgGGCCAGUCGUGgC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 35236 | 0.66 | 0.37351 |
Target: 5'- gCCGuaCCuGGUgccGCCCGGUUcgacguucuacuucuGGUACCGg -3' miRNA: 3'- -GGCcgGGuCCA---CGGGCCAG---------------UCGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 7317 | 0.66 | 0.38666 |
Target: 5'- cCCGGCCauggccgacGcGUGCUCGGUguGCaacccGCCGg -3' miRNA: 3'- -GGCCGGgu-------C-CACGGGCCAguCG-----UGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 45076 | 0.66 | 0.403521 |
Target: 5'- gCgGGCCaCGGGgaGCaUCGGgguUCGGCACCGc -3' miRNA: 3'- -GgCCGG-GUCCa-CG-GGCC---AGUCGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 8618 | 0.66 | 0.403521 |
Target: 5'- --aGCCC-GGUGCaCCGGcaccgccgauccUCGGCACCc -3' miRNA: 3'- ggcCGGGuCCACG-GGCC------------AGUCGUGGc -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 24159 | 0.66 | 0.395033 |
Target: 5'- uCCGGUgCAGG-GUCCGcaggCGGUGCCGc -3' miRNA: 3'- -GGCCGgGUCCaCGGGCca--GUCGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 5949 | 0.66 | 0.395033 |
Target: 5'- gCGGUCCAaccuGGccGCgCCGGUgAGCgACCGg -3' miRNA: 3'- gGCCGGGU----CCa-CG-GGCCAgUCG-UGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 66853 | 0.66 | 0.362255 |
Target: 5'- gCGGCCUcGaccGCCUGGccagcacgUCAGCGCCGg -3' miRNA: 3'- gGCCGGGuCca-CGGGCC--------AGUCGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 39035 | 0.66 | 0.370271 |
Target: 5'- aCGGCUCGgcGGUGUCCauUguGCGCCGg -3' miRNA: 3'- gGCCGGGU--CCACGGGccAguCGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 10496 | 0.66 | 0.38583 |
Target: 5'- cCCGGCCgacgcacUGGGccGCCgaCGGUCAGCGCg- -3' miRNA: 3'- -GGCCGG-------GUCCa-CGG--GCCAGUCGUGgc -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 64548 | 0.66 | 0.392509 |
Target: 5'- gCGGCCUuGGUGaCCgGGUUGGUgcgcaggaucguguACCGg -3' miRNA: 3'- gGCCGGGuCCAC-GGgCCAGUCG--------------UGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 4174 | 0.66 | 0.395033 |
Target: 5'- aUGGCCC-GGUugcGCCCGGcgGGCGCgGu -3' miRNA: 3'- gGCCGGGuCCA---CGGGCCagUCGUGgC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 48121 | 0.66 | 0.378406 |
Target: 5'- uCgGGUCCAccGU-CCCGGUCGGC-CCGg -3' miRNA: 3'- -GgCCGGGUc-CAcGGGCCAGUCGuGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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