miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19008 5' -63.6 NC_004684.1 + 56675 0.66 0.370271
Target:  5'- gUCGGCCUGGcUGCCCuGcCGGUugCGa -3'
miRNA:   3'- -GGCCGGGUCcACGGGcCaGUCGugGC- -5'
19008 5' -63.6 NC_004684.1 + 31935 0.66 0.37351
Target:  5'- uCCGGCCCGGccgcaacggucgcccGcUGUCCGG-CGGgACCa -3'
miRNA:   3'- -GGCCGGGUC---------------C-ACGGGCCaGUCgUGGc -5'
19008 5' -63.6 NC_004684.1 + 11812 0.66 0.370271
Target:  5'- aCC-GCCUuGGUGCCUGGaccccCGGcCACCGg -3'
miRNA:   3'- -GGcCGGGuCCACGGGCCa----GUC-GUGGC- -5'
19008 5' -63.6 NC_004684.1 + 61557 0.66 0.403521
Target:  5'- uUGGUCCGGGUGC--GG-CAGCACUc -3'
miRNA:   3'- gGCCGGGUCCACGggCCaGUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 38300 0.66 0.362255
Target:  5'- aCGGCuCCAGGccaggcucaucUGCUCGGUgGGCaggaACUGg -3'
miRNA:   3'- gGCCG-GGUCC-----------ACGGGCCAgUCG----UGGC- -5'
19008 5' -63.6 NC_004684.1 + 24159 0.66 0.395033
Target:  5'- uCCGGUgCAGG-GUCCGcaggCGGUGCCGc -3'
miRNA:   3'- -GGCCGgGUCCaCGGGCca--GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 25351 0.66 0.354362
Target:  5'- gUCGGCCauCAGG-GCCucccauucguCGGUCGGUACgGg -3'
miRNA:   3'- -GGCCGG--GUCCaCGG----------GCCAGUCGUGgC- -5'
19008 5' -63.6 NC_004684.1 + 5774 0.66 0.38666
Target:  5'- aCUGGCCCAaGUGCgUGGUguGCggGCgGg -3'
miRNA:   3'- -GGCCGGGUcCACGgGCCAguCG--UGgC- -5'
19008 5' -63.6 NC_004684.1 + 30961 0.66 0.395033
Target:  5'- aCUcGCUguGGaacgGCgUGGUCGGCACCGu -3'
miRNA:   3'- -GGcCGGguCCa---CGgGCCAGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 8618 0.66 0.403521
Target:  5'- --aGCCC-GGUGCaCCGGcaccgccgauccUCGGCACCc -3'
miRNA:   3'- ggcCGGGuCCACG-GGCC------------AGUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 16216 0.66 0.38666
Target:  5'- gCGGUCCAuG-GCCCGGcgcaUCGGCcacACCGa -3'
miRNA:   3'- gGCCGGGUcCaCGGGCC----AGUCG---UGGC- -5'
19008 5' -63.6 NC_004684.1 + 43272 0.66 0.38583
Target:  5'- aCGGCUgcugcguCGGcGUGCCgGGcugCGGCACCu -3'
miRNA:   3'- gGCCGG-------GUC-CACGGgCCa--GUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 45076 0.66 0.403521
Target:  5'- gCgGGCCaCGGGgaGCaUCGGgguUCGGCACCGc -3'
miRNA:   3'- -GgCCGG-GUCCa-CG-GGCC---AGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 52272 0.66 0.370271
Target:  5'- -aGGCCCAGcGU-CCCGGUgaCGGCAaggUCGg -3'
miRNA:   3'- ggCCGGGUC-CAcGGGCCA--GUCGU---GGC- -5'
19008 5' -63.6 NC_004684.1 + 63438 0.66 0.361461
Target:  5'- cCUGGCCgGGGUcGUCCGGUgCGGagaacguCACCu -3'
miRNA:   3'- -GGCCGGgUCCA-CGGGCCA-GUC-------GUGGc -5'
19008 5' -63.6 NC_004684.1 + 10155 0.66 0.370271
Target:  5'- gCCcGCCCAGGUggggcguuuGUCCGGcaggcUgAGCACCa -3'
miRNA:   3'- -GGcCGGGUCCA---------CGGGCC-----AgUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 49853 0.66 0.377587
Target:  5'- gCGGUCCuGGUaggcgaccacgucGUCCGGcgUGGCACCGc -3'
miRNA:   3'- gGCCGGGuCCA-------------CGGGCCa-GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 27959 0.66 0.38583
Target:  5'- cUCGGCCUGGG-GCCaCGGUCcuuGUcgcguaucaaacuGCCGa -3'
miRNA:   3'- -GGCCGGGUCCaCGG-GCCAGu--CG-------------UGGC- -5'
19008 5' -63.6 NC_004684.1 + 53103 0.66 0.400112
Target:  5'- aCUGGCCCGacucggcGGUG-UUGGUCAGCgugaagcuguugucGCCGg -3'
miRNA:   3'- -GGCCGGGU-------CCACgGGCCAGUCG--------------UGGC- -5'
19008 5' -63.6 NC_004684.1 + 31858 0.66 0.370271
Target:  5'- gCGGCuCCucGUGCCCgcacucGGUgcagUAGCGCCGg -3'
miRNA:   3'- gGCCG-GGucCACGGG------CCA----GUCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.