Results 21 - 40 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19008 | 5' | -63.6 | NC_004684.1 | + | 42419 | 0.72 | 0.149292 |
Target: 5'- gCC-GCCCuGGgacaccggaagcgugGCCgGGUCGGCACCGa -3' miRNA: 3'- -GGcCGGGuCCa--------------CGGgCCAGUCGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 41257 | 0.72 | 0.152761 |
Target: 5'- gCGGCCagcgAGGUGCUggugCGGUCggacAGCGCCGa -3' miRNA: 3'- gGCCGGg---UCCACGG----GCCAG----UCGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 55924 | 0.72 | 0.159513 |
Target: 5'- cCCGGCCguccucggugaccguGGUgcgcgucgGCCCGGUCAGCuCCGg -3' miRNA: 3'- -GGCCGGgu-------------CCA--------CGGGCCAGUCGuGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 37643 | 0.72 | 0.160732 |
Target: 5'- gCUGGCCauGGccGCCCGGUCAGgCAUCGa -3' miRNA: 3'- -GGCCGGguCCa-CGGGCCAGUC-GUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 13720 | 0.72 | 0.160732 |
Target: 5'- cCCGaCCCAGGcGCUguCGGUCGGUGCCa -3' miRNA: 3'- -GGCcGGGUCCaCGG--GCCAGUCGUGGc -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 49522 | 0.71 | 0.169076 |
Target: 5'- gCGGCCCAGcGUGCacccggCGGUguGCGCgGu -3' miRNA: 3'- gGCCGGGUC-CACGg-----GCCAguCGUGgC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 35372 | 0.71 | 0.177806 |
Target: 5'- aCGGCaaCguGGacUGCCCGGUCAGCAguUCGg -3' miRNA: 3'- gGCCG--GguCC--ACGGGCCAGUCGU--GGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 14246 | 0.71 | 0.177806 |
Target: 5'- gCCGGaCCC-GGUGgaCCCGGUCauuuccggcGGCACCu -3' miRNA: 3'- -GGCC-GGGuCCAC--GGGCCAG---------UCGUGGc -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 15668 | 0.71 | 0.177806 |
Target: 5'- cCUGGCCCAGuacGaCCUGGaaggCGGCACCGg -3' miRNA: 3'- -GGCCGGGUCca-C-GGGCCa---GUCGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 534 | 0.71 | 0.177806 |
Target: 5'- cCUGGaCCCGGcGaaagGCCUGGagGGCACCGg -3' miRNA: 3'- -GGCC-GGGUC-Ca---CGGGCCagUCGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 65813 | 0.71 | 0.177806 |
Target: 5'- aCCGGgC-AGGUGaCCCGGa-GGCACCGg -3' miRNA: 3'- -GGCCgGgUCCAC-GGGCCagUCGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 31337 | 0.71 | 0.182319 |
Target: 5'- uCgGGCugauCCAGGUGCCCGGugUCuGCACgGc -3' miRNA: 3'- -GgCCG----GGUCCACGGGCC--AGuCGUGgC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 37579 | 0.71 | 0.182319 |
Target: 5'- uCUGGCaCCaccaGGGUGuCCCGGUaGGUGCCGg -3' miRNA: 3'- -GGCCG-GG----UCCAC-GGGCCAgUCGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 33122 | 0.71 | 0.186934 |
Target: 5'- gCUGGCCaAGGUGCUCGG-CAuuGCGCUGu -3' miRNA: 3'- -GGCCGGgUCCACGGGCCaGU--CGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 60353 | 0.71 | 0.186934 |
Target: 5'- uUCGGCCagcGGUGCCaGGUCGGUcagguugggcauGCCGg -3' miRNA: 3'- -GGCCGGgu-CCACGGgCCAGUCG------------UGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 55567 | 0.71 | 0.186934 |
Target: 5'- gUGGCCC-GGUGgCCGGggguccaGGCACCa -3' miRNA: 3'- gGCCGGGuCCACgGGCCag-----UCGUGGc -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 10224 | 0.71 | 0.191651 |
Target: 5'- gCCuGCCCAGGUGCgCGaG-CAGCugGCCGu -3' miRNA: 3'- -GGcCGGGUCCACGgGC-CaGUCG--UGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 3653 | 0.71 | 0.193567 |
Target: 5'- gCC-GCCC-GGUGCCgGGUCaucguacgguggcccGGCACCGc -3' miRNA: 3'- -GGcCGGGuCCACGGgCCAG---------------UCGUGGC- -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 2702 | 0.7 | 0.196472 |
Target: 5'- cCCGGCCUggccGGUGCCgGGggCAaguGCGCCa -3' miRNA: 3'- -GGCCGGGu---CCACGGgCCa-GU---CGUGGc -5' |
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19008 | 5' | -63.6 | NC_004684.1 | + | 2851 | 0.7 | 0.201399 |
Target: 5'- cCUGGaCCaCGGGUuCCUGGUC-GCGCCGg -3' miRNA: 3'- -GGCC-GG-GUCCAcGGGCCAGuCGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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