miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19008 5' -63.6 NC_004684.1 + 46322 1.1 0.000191
Target:  5'- aCCGGCCCAGGUGCCCGGUCAGCACCGg -3'
miRNA:   3'- -GGCCGGGUCCACGGGCCAGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 4887 0.79 0.044033
Target:  5'- gCGGCUCAGGcgGCCUGGUCGcCACCGg -3'
miRNA:   3'- gGCCGGGUCCa-CGGGCCAGUcGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 47149 0.77 0.062535
Target:  5'- gCGGCCCcGGUGCCCaGG--AGCACCGu -3'
miRNA:   3'- gGCCGGGuCCACGGG-CCagUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 44475 0.77 0.064236
Target:  5'- gCGGUCCAGGaaCCCGGUCaccuugucgcuGGCACCGa -3'
miRNA:   3'- gGCCGGGUCCacGGGCCAG-----------UCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 61139 0.75 0.08821
Target:  5'- uCCGGCCCagcgacuGGGUGUacUCGGUCAGcCACCc -3'
miRNA:   3'- -GGCCGGG-------UCCACG--GGCCAGUC-GUGGc -5'
19008 5' -63.6 NC_004684.1 + 25363 0.75 0.093245
Target:  5'- gCGGCCUgauGGa-CCCGGUCAGCGCCu -3'
miRNA:   3'- gGCCGGGu--CCacGGGCCAGUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 30627 0.75 0.098292
Target:  5'- gUCGGCaCCGGGcgcgGCCCuggcggcGUCAGCGCCGg -3'
miRNA:   3'- -GGCCG-GGUCCa---CGGGc------CAGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 37565 0.74 0.103596
Target:  5'- cCCGGUgUaccgggagcuggAGGUGCCCGGcaUCGGUACCGu -3'
miRNA:   3'- -GGCCGgG------------UCCACGGGCC--AGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 1470 0.74 0.109169
Target:  5'- aCCGGgCCGGacGUGCCCGGUgCGGCgGCCc -3'
miRNA:   3'- -GGCCgGGUC--CACGGGCCA-GUCG-UGGc -5'
19008 5' -63.6 NC_004684.1 + 1226 0.74 0.11206
Target:  5'- gUCGGCCUcGGcgGCCUGGUCGGuCGCCc -3'
miRNA:   3'- -GGCCGGGuCCa-CGGGCCAGUC-GUGGc -5'
19008 5' -63.6 NC_004684.1 + 63886 0.73 0.121167
Target:  5'- uCgGGCCCAgcGGUGCCagguGGUCcaGGUACCGg -3'
miRNA:   3'- -GgCCGGGU--CCACGGg---CCAG--UCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 16723 0.73 0.121167
Target:  5'- aCGGCaCCGGGcgcacGCCUGGUCcGCACCc -3'
miRNA:   3'- gGCCG-GGUCCa----CGGGCCAGuCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 44538 0.73 0.127616
Target:  5'- gUGGCCCGGacgaaCCCGGUCGGCagGCCGg -3'
miRNA:   3'- gGCCGGGUCcac--GGGCCAGUCG--UGGC- -5'
19008 5' -63.6 NC_004684.1 + 1575 0.73 0.130959
Target:  5'- gCCGGUgccuCCGGGUcaccuGCCCGGUgcaCGGCAUCGg -3'
miRNA:   3'- -GGCCG----GGUCCA-----CGGGCCA---GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 36771 0.73 0.134382
Target:  5'- gCCGcGCCC-GGUGCCgacgcUGGUCGGCGgCGg -3'
miRNA:   3'- -GGC-CGGGuCCACGG-----GCCAGUCGUgGC- -5'
19008 5' -63.6 NC_004684.1 + 43721 0.73 0.134382
Target:  5'- uCCGGgCCGaccaggccgucGGUGuaCCCGGUCAGCAgCGg -3'
miRNA:   3'- -GGCCgGGU-----------CCAC--GGGCCAGUCGUgGC- -5'
19008 5' -63.6 NC_004684.1 + 53399 0.73 0.134382
Target:  5'- aCCGuGUCCAGGUGgCCGGgcuggccuGCGCCGc -3'
miRNA:   3'- -GGC-CGGGUCCACgGGCCagu-----CGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 59439 0.73 0.137887
Target:  5'- gCGGCCUugcccaccGGuGUGCgCCGGUCGGCGgCGa -3'
miRNA:   3'- gGCCGGG--------UC-CACG-GGCCAGUCGUgGC- -5'
19008 5' -63.6 NC_004684.1 + 27353 0.72 0.148911
Target:  5'- gCCGuGCgaGGGggaucgGCCCGGUCuGCGCCGc -3'
miRNA:   3'- -GGC-CGggUCCa-----CGGGCCAGuCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 61443 0.72 0.148911
Target:  5'- aCCGGCgcggCCAGGUuggaccGCCCGGUggcCAGCGCgGc -3'
miRNA:   3'- -GGCCG----GGUCCA------CGGGCCA---GUCGUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.