miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19008 5' -63.6 NC_004684.1 + 2851 0.7 0.201399
Target:  5'- cCUGGaCCaCGGGUuCCUGGUC-GCGCCGg -3'
miRNA:   3'- -GGCC-GG-GUCCAcGGGCCAGuCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 49522 0.71 0.169076
Target:  5'- gCGGCCCAGcGUGCacccggCGGUguGCGCgGu -3'
miRNA:   3'- gGCCGGGUC-CACGg-----GCCAguCGUGgC- -5'
19008 5' -63.6 NC_004684.1 + 65813 0.71 0.177806
Target:  5'- aCCGGgC-AGGUGaCCCGGa-GGCACCGg -3'
miRNA:   3'- -GGCCgGgUCCAC-GGGCCagUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 534 0.71 0.177806
Target:  5'- cCUGGaCCCGGcGaaagGCCUGGagGGCACCGg -3'
miRNA:   3'- -GGCC-GGGUC-Ca---CGGGCCagUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 33122 0.71 0.186934
Target:  5'- gCUGGCCaAGGUGCUCGG-CAuuGCGCUGu -3'
miRNA:   3'- -GGCCGGgUCCACGGGCCaGU--CGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 60353 0.71 0.186934
Target:  5'- uUCGGCCagcGGUGCCaGGUCGGUcagguugggcauGCCGg -3'
miRNA:   3'- -GGCCGGgu-CCACGGgCCAGUCG------------UGGC- -5'
19008 5' -63.6 NC_004684.1 + 55567 0.71 0.186934
Target:  5'- gUGGCCC-GGUGgCCGGggguccaGGCACCa -3'
miRNA:   3'- gGCCGGGuCCACgGGCCag-----UCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 10224 0.71 0.191651
Target:  5'- gCCuGCCCAGGUGCgCGaG-CAGCugGCCGu -3'
miRNA:   3'- -GGcCGGGUCCACGgGC-CaGUCG--UGGC- -5'
19008 5' -63.6 NC_004684.1 + 2702 0.7 0.196472
Target:  5'- cCCGGCCUggccGGUGCCgGGggCAaguGCGCCa -3'
miRNA:   3'- -GGCCGGGu---CCACGGgCCa-GU---CGUGGc -5'
19008 5' -63.6 NC_004684.1 + 13720 0.72 0.160732
Target:  5'- cCCGaCCCAGGcGCUguCGGUCGGUGCCa -3'
miRNA:   3'- -GGCcGGGUCCaCGG--GCCAGUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 37643 0.72 0.160732
Target:  5'- gCUGGCCauGGccGCCCGGUCAGgCAUCGa -3'
miRNA:   3'- -GGCCGGguCCa-CGGGCCAGUC-GUGGC- -5'
19008 5' -63.6 NC_004684.1 + 59439 0.73 0.137887
Target:  5'- gCGGCCUugcccaccGGuGUGCgCCGGUCGGCGgCGa -3'
miRNA:   3'- gGCCGGG--------UC-CACG-GGCCAGUCGUgGC- -5'
19008 5' -63.6 NC_004684.1 + 47149 0.77 0.062535
Target:  5'- gCGGCCCcGGUGCCCaGG--AGCACCGu -3'
miRNA:   3'- gGCCGGGuCCACGGG-CCagUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 61139 0.75 0.08821
Target:  5'- uCCGGCCCagcgacuGGGUGUacUCGGUCAGcCACCc -3'
miRNA:   3'- -GGCCGGG-------UCCACG--GGCCAGUC-GUGGc -5'
19008 5' -63.6 NC_004684.1 + 25363 0.75 0.093245
Target:  5'- gCGGCCUgauGGa-CCCGGUCAGCGCCu -3'
miRNA:   3'- gGCCGGGu--CCacGGGCCAGUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 37565 0.74 0.103596
Target:  5'- cCCGGUgUaccgggagcuggAGGUGCCCGGcaUCGGUACCGu -3'
miRNA:   3'- -GGCCGgG------------UCCACGGGCC--AGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 1226 0.74 0.11206
Target:  5'- gUCGGCCUcGGcgGCCUGGUCGGuCGCCc -3'
miRNA:   3'- -GGCCGGGuCCa-CGGGCCAGUC-GUGGc -5'
19008 5' -63.6 NC_004684.1 + 63886 0.73 0.121167
Target:  5'- uCgGGCCCAgcGGUGCCagguGGUCcaGGUACCGg -3'
miRNA:   3'- -GgCCGGGU--CCACGGg---CCAG--UCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 44538 0.73 0.127616
Target:  5'- gUGGCCCGGacgaaCCCGGUCGGCagGCCGg -3'
miRNA:   3'- gGCCGGGUCcac--GGGCCAGUCG--UGGC- -5'
19008 5' -63.6 NC_004684.1 + 36771 0.73 0.134382
Target:  5'- gCCGcGCCC-GGUGCCgacgcUGGUCGGCGgCGg -3'
miRNA:   3'- -GGC-CGGGuCCACGG-----GCCAGUCGUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.