miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19008 5' -63.6 NC_004684.1 + 46322 1.1 0.000191
Target:  5'- aCCGGCCCAGGUGCCCGGUCAGCACCGg -3'
miRNA:   3'- -GGCCGGGUCCACGGGCCAGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 37579 0.71 0.182319
Target:  5'- uCUGGCaCCaccaGGGUGuCCCGGUaGGUGCCGg -3'
miRNA:   3'- -GGCCG-GG----UCCAC-GGGCCAgUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 32230 0.7 0.201399
Target:  5'- uCCGGCUCGgccaccgaguuGGUGCCCaGGUCgauGGCagaGCCGa -3'
miRNA:   3'- -GGCCGGGU-----------CCACGGG-CCAG---UCG---UGGC- -5'
19008 5' -63.6 NC_004684.1 + 45076 0.66 0.403521
Target:  5'- gCgGGCCaCGGGgaGCaUCGGgguUCGGCACCGc -3'
miRNA:   3'- -GgCCGG-GUCCa-CG-GGCC---AGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 16723 0.73 0.121167
Target:  5'- aCGGCaCCGGGcgcacGCCUGGUCcGCACCc -3'
miRNA:   3'- gGCCG-GGUCCa----CGGGCCAGuCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 1575 0.73 0.130959
Target:  5'- gCCGGUgccuCCGGGUcaccuGCCCGGUgcaCGGCAUCGg -3'
miRNA:   3'- -GGCCG----GGUCCA-----CGGGCCA---GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 53399 0.73 0.134382
Target:  5'- aCCGuGUCCAGGUGgCCGGgcuggccuGCGCCGc -3'
miRNA:   3'- -GGC-CGGGUCCACgGGCCagu-----CGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 27353 0.72 0.148911
Target:  5'- gCCGuGCgaGGGggaucgGCCCGGUCuGCGCCGc -3'
miRNA:   3'- -GGC-CGggUCCa-----CGGGCCAGuCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 41257 0.72 0.152761
Target:  5'- gCGGCCagcgAGGUGCUggugCGGUCggacAGCGCCGa -3'
miRNA:   3'- gGCCGGg---UCCACGG----GCCAG----UCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 31337 0.71 0.182319
Target:  5'- uCgGGCugauCCAGGUGCCCGGugUCuGCACgGc -3'
miRNA:   3'- -GgCCG----GGUCCACGGGCC--AGuCGUGgC- -5'
19008 5' -63.6 NC_004684.1 + 14246 0.71 0.177806
Target:  5'- gCCGGaCCC-GGUGgaCCCGGUCauuuccggcGGCACCu -3'
miRNA:   3'- -GGCC-GGGuCCAC--GGGCCAG---------UCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 42419 0.72 0.149292
Target:  5'- gCC-GCCCuGGgacaccggaagcgugGCCgGGUCGGCACCGa -3'
miRNA:   3'- -GGcCGGGuCCa--------------CGGgCCAGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 44475 0.77 0.064236
Target:  5'- gCGGUCCAGGaaCCCGGUCaccuugucgcuGGCACCGa -3'
miRNA:   3'- gGCCGGGUCCacGGGCCAG-----------UCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 15668 0.71 0.177806
Target:  5'- cCUGGCCCAGuacGaCCUGGaaggCGGCACCGg -3'
miRNA:   3'- -GGCCGGGUCca-C-GGGCCa---GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 30627 0.75 0.098292
Target:  5'- gUCGGCaCCGGGcgcgGCCCuggcggcGUCAGCGCCGg -3'
miRNA:   3'- -GGCCG-GGUCCa---CGGGc------CAGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 61443 0.72 0.148911
Target:  5'- aCCGGCgcggCCAGGUuggaccGCCCGGUggcCAGCGCgGc -3'
miRNA:   3'- -GGCCG----GGUCCA------CGGGCCA---GUCGUGgC- -5'
19008 5' -63.6 NC_004684.1 + 35372 0.71 0.177806
Target:  5'- aCGGCaaCguGGacUGCCCGGUCAGCAguUCGg -3'
miRNA:   3'- gGCCG--GguCC--ACGGGCCAGUCGU--GGC- -5'
19008 5' -63.6 NC_004684.1 + 3653 0.71 0.193567
Target:  5'- gCC-GCCC-GGUGCCgGGUCaucguacgguggcccGGCACCGc -3'
miRNA:   3'- -GGcCGGGuCCACGGgCCAG---------------UCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 1470 0.74 0.109169
Target:  5'- aCCGGgCCGGacGUGCCCGGUgCGGCgGCCc -3'
miRNA:   3'- -GGCCgGGUC--CACGGGCCA-GUCG-UGGc -5'
19008 5' -63.6 NC_004684.1 + 43721 0.73 0.134382
Target:  5'- uCCGGgCCGaccaggccgucGGUGuaCCCGGUCAGCAgCGg -3'
miRNA:   3'- -GGCCgGGU-----------CCAC--GGGCCAGUCGUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.