miRNA display CGI


Results 21 - 40 of 177 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19009 3' -56.6 NC_004684.1 + 17293 0.66 0.67845
Target:  5'- gGgGGCCA-GCCGCCuGGucguGGUGGAcuGCg -3'
miRNA:   3'- gCgCCGGUgCGGUGGuCU----UCACUU--CG- -5'
19009 3' -56.6 NC_004684.1 + 63977 0.66 0.67845
Target:  5'- gGCGGCCAgCGgUGCCAG-GGUGccGUu -3'
miRNA:   3'- gCGCCGGU-GCgGUGGUCuUCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 25441 0.66 0.703921
Target:  5'- cCGCuGGCCugucggacugcuccgGUGCCAUCAGcgaccuGGUGGAGCu -3'
miRNA:   3'- -GCG-CCGG---------------UGCGGUGGUCu-----UCACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 7154 0.66 0.702866
Target:  5'- gGUGGCCAcCGCCugCGGGugcaccuacaacgccGAGGCc -3'
miRNA:   3'- gCGCCGGU-GCGGugGUCUuca------------CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 15781 0.66 0.717565
Target:  5'- uCGCGGCgGCGaCACCGGcAAcGUGcacaccaccacgccGAGCg -3'
miRNA:   3'- -GCGCCGgUGCgGUGGUC-UU-CAC--------------UUCG- -5'
19009 3' -56.6 NC_004684.1 + 23673 0.66 0.709183
Target:  5'- cCGaCGGCCugGUCggcccggACCAGAGcGUGGccuccaaccugGGCg -3'
miRNA:   3'- -GC-GCCGGugCGG-------UGGUCUU-CACU-----------UCG- -5'
19009 3' -56.6 NC_004684.1 + 42319 0.66 0.664543
Target:  5'- gGuCGGCCACGUUGCCGGugcgcgcgaacuucUGGAGCu -3'
miRNA:   3'- gC-GCCGGUGCGGUGGUCuuc-----------ACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 7909 0.66 0.710233
Target:  5'- gGUGGCCGC-CaGCCAGccGGUGGAGa -3'
miRNA:   3'- gCGCCGGUGcGgUGGUCu-UCACUUCg -5'
19009 3' -56.6 NC_004684.1 + 44877 0.66 0.710233
Target:  5'- cCGgGGUCGCG-CACCGGAcggaaccaGGUGGcacguuGGCg -3'
miRNA:   3'- -GCgCCGGUGCgGUGGUCU--------UCACU------UCG- -5'
19009 3' -56.6 NC_004684.1 + 35170 0.66 0.720696
Target:  5'- gGUGGCCGaGCCggaACCGGguGUGcAGUg -3'
miRNA:   3'- gCGCCGGUgCGG---UGGUCuuCACuUCG- -5'
19009 3' -56.6 NC_004684.1 + 63373 0.66 0.710233
Target:  5'- aGCGGCCgACG-CGCCAGccGaUGGcGGCg -3'
miRNA:   3'- gCGCCGG-UGCgGUGGUCuuC-ACU-UCG- -5'
19009 3' -56.6 NC_004684.1 + 20057 0.66 0.699698
Target:  5'- gGUGGCCAUGCucgacgcccaCACCGGcgacacGGUGAcGGCc -3'
miRNA:   3'- gCGCCGGUGCG----------GUGGUCu-----UCACU-UCG- -5'
19009 3' -56.6 NC_004684.1 + 9567 0.66 0.67845
Target:  5'- gGCGGCCAgCaCCGCCGGGAcc-AGGCc -3'
miRNA:   3'- gCGCCGGU-GcGGUGGUCUUcacUUCG- -5'
19009 3' -56.6 NC_004684.1 + 41088 0.66 0.67845
Target:  5'- gGCGGCCugGCCgagcugcguACCGauggccGAGGUcaccgaauccuuGAGGCc -3'
miRNA:   3'- gCGCCGGugCGG---------UGGU------CUUCA------------CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 36224 0.66 0.703921
Target:  5'- gCGUGGCCAcCGCCgagaccgcuggcgugGCCAaGAGcuaUGAGGUg -3'
miRNA:   3'- -GCGCCGGU-GCGG---------------UGGUcUUC---ACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 61929 0.66 0.710233
Target:  5'- uGCgGGCCACGgcacCCGCCGGGccUGguGCa -3'
miRNA:   3'- gCG-CCGGUGC----GGUGGUCUucACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 46259 0.66 0.67845
Target:  5'- gCGCGGUgACaCCGCCGGAcacGUGGAa- -3'
miRNA:   3'- -GCGCCGgUGcGGUGGUCUu--CACUUcg -5'
19009 3' -56.6 NC_004684.1 + 43226 0.66 0.68591
Target:  5'- gGCGGCaC-CGCCugCGGAcccugcaccggagcGGUGcgcAGCg -3'
miRNA:   3'- gCGCCG-GuGCGGugGUCU--------------UCACu--UCG- -5'
19009 3' -56.6 NC_004684.1 + 57010 0.66 0.710233
Target:  5'- gGCGGCCugGUacCCGGcGGUGcgcGCg -3'
miRNA:   3'- gCGCCGGugCGguGGUCuUCACuu-CG- -5'
19009 3' -56.6 NC_004684.1 + 11611 0.66 0.710233
Target:  5'- -cCGGUCACGCCGCCAucGAAGg----- -3'
miRNA:   3'- gcGCCGGUGCGGUGGU--CUUCacuucg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.