miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19009 3' -56.6 NC_004684.1 + 8455 0.69 0.488349
Target:  5'- gCGCaaGGCCugGCUGuuguccCCGGAggcggGGUGggGCg -3'
miRNA:   3'- -GCG--CCGGugCGGU------GGUCU-----UCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 8675 0.68 0.581868
Target:  5'- uGCGGCCAggUGCCugUGGccgugcGUGAGGUc -3'
miRNA:   3'- gCGCCGGU--GCGGugGUCuu----CACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 9044 0.67 0.646286
Target:  5'- gCGCGGCaACGCCAgCAGGGccaccgGgcGCg -3'
miRNA:   3'- -GCGCCGgUGCGGUgGUCUUca----CuuCG- -5'
19009 3' -56.6 NC_004684.1 + 9567 0.66 0.67845
Target:  5'- gGCGGCCAgCaCCGCCGGGAcc-AGGCc -3'
miRNA:   3'- gCGCCGGU-GcGGUGGUCUUcacUUCG- -5'
19009 3' -56.6 NC_004684.1 + 9713 0.66 0.710233
Target:  5'- uGCcuGGCCGaugGCCACCuGcuGUGggGUc -3'
miRNA:   3'- gCG--CCGGUg--CGGUGGuCuuCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 10138 0.7 0.478368
Target:  5'- uGCgGGCCGacggUGCCGCCcGcccAGGUGggGCg -3'
miRNA:   3'- gCG-CCGGU----GCGGUGGuC---UUCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 10237 0.72 0.35912
Target:  5'- gCGuCGGCCAcCGCCGCCAug---GAGGCg -3'
miRNA:   3'- -GC-GCCGGU-GCGGUGGUcuucaCUUCG- -5'
19009 3' -56.6 NC_004684.1 + 10819 0.69 0.498428
Target:  5'- gGCGGCUggGCCGCaccGAGUG-AGCa -3'
miRNA:   3'- gCGCCGGugCGGUGgucUUCACuUCG- -5'
19009 3' -56.6 NC_004684.1 + 11025 0.69 0.488349
Target:  5'- gGCGGCaguUACGUCAUCGGcguGGUGGAGg -3'
miRNA:   3'- gCGCCG---GUGCGGUGGUCu--UCACUUCg -5'
19009 3' -56.6 NC_004684.1 + 11162 0.74 0.255761
Target:  5'- gGUGGaCCugGCCGCCAGcGAGUGGGu- -3'
miRNA:   3'- gCGCC-GGugCGGUGGUC-UUCACUUcg -5'
19009 3' -56.6 NC_004684.1 + 11611 0.66 0.710233
Target:  5'- -cCGGUCACGCCGCCAucGAAGg----- -3'
miRNA:   3'- gcGCCGGUGCGGUGGU--CUUCacuucg -5'
19009 3' -56.6 NC_004684.1 + 12036 0.7 0.458714
Target:  5'- --aGGCCAUGCUcgACCAGcAG-GAGGCg -3'
miRNA:   3'- gcgCCGGUGCGG--UGGUCuUCaCUUCG- -5'
19009 3' -56.6 NC_004684.1 + 12061 0.66 0.67845
Target:  5'- gGCucGCCugGCCGCCGagcgcgacGAGGUGcuGGCc -3'
miRNA:   3'- gCGc-CGGugCGGUGGU--------CUUCACu-UCG- -5'
19009 3' -56.6 NC_004684.1 + 12769 0.72 0.350846
Target:  5'- gCGCGGCUGCGCCugCGGccaacGAG-GAcaacGGCa -3'
miRNA:   3'- -GCGCCGGUGCGGugGUC-----UUCaCU----UCG- -5'
19009 3' -56.6 NC_004684.1 + 13249 0.67 0.635528
Target:  5'- cCGUGGCCAgGCCgugaccGCCAGcgcgcuGGUGGccgccgguGGCu -3'
miRNA:   3'- -GCGCCGGUgCGG------UGGUCu-----UCACU--------UCG- -5'
19009 3' -56.6 NC_004684.1 + 13358 0.69 0.488349
Target:  5'- gGCGGgCACacCCGCCAcGAAGgccgagGAGGCa -3'
miRNA:   3'- gCGCCgGUGc-GGUGGU-CUUCa-----CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 14480 0.75 0.219514
Target:  5'- uGCGGCCACGCCGCCGugcuGGccgGAcGCu -3'
miRNA:   3'- gCGCCGGUGCGGUGGUcu--UCa--CUuCG- -5'
19009 3' -56.6 NC_004684.1 + 14574 0.66 0.699698
Target:  5'- gGUGcGCCgGgGCCACC-GAGGaGGAGCg -3'
miRNA:   3'- gCGC-CGG-UgCGGUGGuCUUCaCUUCG- -5'
19009 3' -56.6 NC_004684.1 + 14651 0.74 0.289597
Target:  5'- aGCGGCCACGaCgACCuGGAG-GAcAGCg -3'
miRNA:   3'- gCGCCGGUGC-GgUGGuCUUCaCU-UCG- -5'
19009 3' -56.6 NC_004684.1 + 14803 0.77 0.168876
Target:  5'- gGCGGCgCGCuGuCCACCGGAcuGUGggGCg -3'
miRNA:   3'- gCGCCG-GUG-C-GGUGGUCUu-CACuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.