miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19009 3' -56.6 NC_004684.1 + 547 0.72 0.35912
Target:  5'- gCGCGGUCGaggcCGCCACCgAGGAGgacaaggccGAGGCc -3'
miRNA:   3'- -GCGCCGGU----GCGGUGG-UCUUCa--------CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 907 0.68 0.550083
Target:  5'- cCGCcaaGGCCuagcCGCCACCGGGuggcggcGUGGAGa -3'
miRNA:   3'- -GCG---CCGGu---GCGGUGGUCUu------CACUUCg -5'
19009 3' -56.6 NC_004684.1 + 1775 0.7 0.457743
Target:  5'- gCGUGGCUggACGCCaACCAGGAcgccgccGUGcGGCu -3'
miRNA:   3'- -GCGCCGG--UGCGG-UGGUCUU-------CACuUCG- -5'
19009 3' -56.6 NC_004684.1 + 1782 0.66 0.667757
Target:  5'- aGCGcGCCAacaGCUGCgAGAAGggcGAGGUc -3'
miRNA:   3'- gCGC-CGGUg--CGGUGgUCUUCa--CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 2059 0.72 0.350846
Target:  5'- -aCGGCCAgCGCCACguG--GUGGAGCg -3'
miRNA:   3'- gcGCCGGU-GCGGUGguCuuCACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 2365 0.69 0.529191
Target:  5'- uCGUGGCCGCcaucgacaugGCCACCuucgccGGGUGcGGCg -3'
miRNA:   3'- -GCGCCGGUG----------CGGUGGuc----UUCACuUCG- -5'
19009 3' -56.6 NC_004684.1 + 2703 0.67 0.657033
Target:  5'- -cCGGCCugGCCgguGCCGGggGc-AAGUg -3'
miRNA:   3'- gcGCCGGugCGG---UGGUCuuCacUUCG- -5'
19009 3' -56.6 NC_004684.1 + 3244 0.67 0.624766
Target:  5'- aCGCGGagaCCACGCUgcuggccugGCCGGAcaucGUGGAcGCa -3'
miRNA:   3'- -GCGCC---GGUGCGG---------UGGUCUu---CACUU-CG- -5'
19009 3' -56.6 NC_004684.1 + 4895 0.72 0.367529
Target:  5'- gGCGGCCugguCGCCACCGGccucgGcGGCa -3'
miRNA:   3'- gCGCCGGu---GCGGUGGUCuuca-CuUCG- -5'
19009 3' -56.6 NC_004684.1 + 5147 0.68 0.571223
Target:  5'- aGCGggcaggaccaGCCGCGCUACCccgaugucGAGGUGgcGCu -3'
miRNA:   3'- gCGC----------CGGUGCGGUGGu-------CUUCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 5234 0.67 0.657033
Target:  5'- aCGCGaGCCcuGCGCaagGCCGGGcacGGcGAGGCg -3'
miRNA:   3'- -GCGC-CGG--UGCGg--UGGUCU---UCaCUUCG- -5'
19009 3' -56.6 NC_004684.1 + 6236 0.7 0.439499
Target:  5'- gGCGGCCAgGCCuuCGacGGUGAuGCa -3'
miRNA:   3'- gCGCCGGUgCGGugGUcuUCACUuCG- -5'
19009 3' -56.6 NC_004684.1 + 6421 0.74 0.289597
Target:  5'- cCGaGGCCgACGCCACCAgccacGAGGUGuacAGCa -3'
miRNA:   3'- -GCgCCGG-UGCGGUGGU-----CUUCACu--UCG- -5'
19009 3' -56.6 NC_004684.1 + 6659 0.69 0.518854
Target:  5'- gCGCGGUgucgaCAUGCCA-CGGGAGUGGccuGCa -3'
miRNA:   3'- -GCGCCG-----GUGCGGUgGUCUUCACUu--CG- -5'
19009 3' -56.6 NC_004684.1 + 7154 0.66 0.702866
Target:  5'- gGUGGCCAcCGCCugCGGGugcaccuacaacgccGAGGCc -3'
miRNA:   3'- gCGCCGGU-GCGGugGUCUuca------------CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 7333 0.68 0.560626
Target:  5'- cCGCcgGGCCGCG-CGCCAcGAGUgcGAGGCc -3'
miRNA:   3'- -GCG--CCGGUGCgGUGGUcUUCA--CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 7434 0.76 0.211713
Target:  5'- uGCGGCacgaGCGCCGCCAGcacaacgcgcacGUGggGCc -3'
miRNA:   3'- gCGCCGg---UGCGGUGGUCuu----------CACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 7909 0.66 0.710233
Target:  5'- gGUGGCCGC-CaGCCAGccGGUGGAGa -3'
miRNA:   3'- gCGCCGGUGcGgUGGUCu-UCACUUCg -5'
19009 3' -56.6 NC_004684.1 + 7979 0.7 0.439499
Target:  5'- gGCGGCCguGCGCaaCACCuGcAAGUGcAGCg -3'
miRNA:   3'- gCGCCGG--UGCG--GUGGuC-UUCACuUCG- -5'
19009 3' -56.6 NC_004684.1 + 8045 0.69 0.508597
Target:  5'- gGCGGUCcuccaGCGCCAgCAG-GGUGcGGCu -3'
miRNA:   3'- gCGCCGG-----UGCGGUgGUCuUCACuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.