miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19009 3' -56.6 NC_004684.1 + 67032 0.68 0.60327
Target:  5'- aCGaUGGCCugGCCACC-GAGcUGcuGCg -3'
miRNA:   3'- -GC-GCCGGugCGGUGGuCUUcACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 66663 0.67 0.646286
Target:  5'- gGCGGCC-CgGUCACCGGcGGUGcccAGGUc -3'
miRNA:   3'- gCGCCGGuG-CGGUGGUCuUCAC---UUCG- -5'
19009 3' -56.6 NC_004684.1 + 66635 0.68 0.581868
Target:  5'- gGCGGUguccaggaGCGCCGCCAGGgcgucGGUGucGUc -3'
miRNA:   3'- gCGCCGg-------UGCGGUGGUCU-----UCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 66584 0.68 0.592553
Target:  5'- uGCGGgC-CGCCACgGcGAGGUGcAGGUg -3'
miRNA:   3'- gCGCCgGuGCGGUGgU-CUUCAC-UUCG- -5'
19009 3' -56.6 NC_004684.1 + 66460 0.7 0.44905
Target:  5'- gGCGGCguugucucCACGCCGCCAcccGGUGGcGGCu -3'
miRNA:   3'- gCGCCG--------GUGCGGUGGUcu-UCACU-UCG- -5'
19009 3' -56.6 NC_004684.1 + 66358 0.67 0.635528
Target:  5'- gGCGGCCagggcgACGCgGgUguuGGggGUGAAGUc -3'
miRNA:   3'- gCGCCGG------UGCGgUgG---UCuuCACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 66305 0.7 0.468489
Target:  5'- uCGCGGCCugGUCACC-GAucacGUccAGCg -3'
miRNA:   3'- -GCGCCGGugCGGUGGuCUu---CAcuUCG- -5'
19009 3' -56.6 NC_004684.1 + 66014 0.7 0.439499
Target:  5'- gGCGGCCuugGCGUCgGCCAG-GGUGuuGGCg -3'
miRNA:   3'- gCGCCGG---UGCGG-UGGUCuUCACu-UCG- -5'
19009 3' -56.6 NC_004684.1 + 65890 0.67 0.612935
Target:  5'- gCGCGGCgcgcaggUugGCCACCAGGGccGccGCa -3'
miRNA:   3'- -GCGCCG-------GugCGGUGGUCUUcaCuuCG- -5'
19009 3' -56.6 NC_004684.1 + 65856 0.66 0.720696
Target:  5'- gGgGGCCGCugguGCCACCucggAGggGuUGAcGCc -3'
miRNA:   3'- gCgCCGGUG----CGGUGG----UCuuC-ACUuCG- -5'
19009 3' -56.6 NC_004684.1 + 65452 0.67 0.635528
Target:  5'- gCGCGGCCaccguGCGCCgguACCAGGcccggcaggccgGGUccGGCa -3'
miRNA:   3'- -GCGCCGG-----UGCGG---UGGUCU------------UCAcuUCG- -5'
19009 3' -56.6 NC_004684.1 + 65392 0.72 0.367529
Target:  5'- gGCGGUCcaGCGCCcagGCCAGcAGUGucGAGCu -3'
miRNA:   3'- gCGCCGG--UGCGG---UGGUCuUCAC--UUCG- -5'
19009 3' -56.6 NC_004684.1 + 65293 0.69 0.507577
Target:  5'- cCGCGccguaguGCUGCGCCACCAGuugcGAGcUGgcGCg -3'
miRNA:   3'- -GCGC-------CGGUGCGGUGGUC----UUC-ACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 64996 0.67 0.657033
Target:  5'- uGCGGCU-CGCCAgCGGcguuGGUGGuguGGCc -3'
miRNA:   3'- gCGCCGGuGCGGUgGUCu---UCACU---UCG- -5'
19009 3' -56.6 NC_004684.1 + 64883 0.66 0.710233
Target:  5'- -cCGGUCGCGCCcCCGGGuaccgaaaucAGUGGgucuuGGCg -3'
miRNA:   3'- gcGCCGGUGCGGuGGUCU----------UCACU-----UCG- -5'
19009 3' -56.6 NC_004684.1 + 64083 0.75 0.219514
Target:  5'- aGCGGCU-CGCCACCGGAgaugaccaacggAGUGuccGGCa -3'
miRNA:   3'- gCGCCGGuGCGGUGGUCU------------UCACu--UCG- -5'
19009 3' -56.6 NC_004684.1 + 63977 0.66 0.67845
Target:  5'- gGCGGCCAgCGgUGCCAG-GGUGccGUu -3'
miRNA:   3'- gCGCCGGU-GCgGUGGUCuUCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 63907 0.69 0.539603
Target:  5'- gGCGGCCACgguGCgGCCcGgcGUGGcugAGCu -3'
miRNA:   3'- gCGCCGGUG---CGgUGGuCuuCACU---UCG- -5'
19009 3' -56.6 NC_004684.1 + 63757 0.69 0.529191
Target:  5'- gGCGGCCACuaguuugcgGCCGaCAGcaGGGUGAAGg -3'
miRNA:   3'- gCGCCGGUG---------CGGUgGUC--UUCACUUCg -5'
19009 3' -56.6 NC_004684.1 + 63695 0.66 0.720696
Target:  5'- gCGCGGCgGCGCUggcgaucuccuGCCAGcgugccaacaGGGUGu-GCg -3'
miRNA:   3'- -GCGCCGgUGCGG-----------UGGUC----------UUCACuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.