miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19009 3' -56.6 NC_004684.1 + 46162 1.12 0.000581
Target:  5'- uCGCGGCCACGCCACCAGAAGUGAAGCg -3'
miRNA:   3'- -GCGCCGGUGCGGUGGUCUUCACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 16281 0.82 0.078304
Target:  5'- uCGCGGCCAUGCCuGCCAGucGUGAcuucauGGCc -3'
miRNA:   3'- -GCGCCGGUGCGG-UGGUCuuCACU------UCG- -5'
19009 3' -56.6 NC_004684.1 + 43534 0.81 0.09791
Target:  5'- gGUGGCUGCGCCACCuccGAacGGUGAGGUa -3'
miRNA:   3'- gCGCCGGUGCGGUGGu--CU--UCACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 41440 0.8 0.112433
Target:  5'- uGCGGCgGUGCCGCCGGugucAGUGggGCu -3'
miRNA:   3'- gCGCCGgUGCGGUGGUCu---UCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 49039 0.77 0.164432
Target:  5'- aGCGGCacCGCGCCGCCGGucGgcuccgGggGCg -3'
miRNA:   3'- gCGCCG--GUGCGGUGGUCuuCa-----CuuCG- -5'
19009 3' -56.6 NC_004684.1 + 14803 0.77 0.168876
Target:  5'- gGCGGCgCGCuGuCCACCGGAcuGUGggGCg -3'
miRNA:   3'- gCGCCG-GUG-C-GGUGGUCUu-CACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 19062 0.76 0.203091
Target:  5'- uGCGGCaggcugGCGUCcUCGGAGGUGAGGCa -3'
miRNA:   3'- gCGCCGg-----UGCGGuGGUCUUCACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 30267 0.76 0.208443
Target:  5'- aCGUGGCUACGUCaaGCCAGAGGaccUGAgcGGCg -3'
miRNA:   3'- -GCGCCGGUGCGG--UGGUCUUC---ACU--UCG- -5'
19009 3' -56.6 NC_004684.1 + 7434 0.76 0.211713
Target:  5'- uGCGGCacgaGCGCCGCCAGcacaacgcgcacGUGggGCc -3'
miRNA:   3'- gCGCCGg---UGCGGUGGUCuu----------CACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 64083 0.75 0.219514
Target:  5'- aGCGGCU-CGCCACCGGAgaugaccaacggAGUGuccGGCa -3'
miRNA:   3'- gCGCCGGuGCGGUGGUCU------------UCACu--UCG- -5'
19009 3' -56.6 NC_004684.1 + 14480 0.75 0.219514
Target:  5'- uGCGGCCACGCCGCCGugcuGGccgGAcGCu -3'
miRNA:   3'- gCGCCGGUGCGGUGGUcu--UCa--CUuCG- -5'
19009 3' -56.6 NC_004684.1 + 26967 0.75 0.249396
Target:  5'- gGUGGCCAacgcCGCCAuCCAGGccGGUGcGAGCg -3'
miRNA:   3'- gCGCCGGU----GCGGU-GGUCU--UCAC-UUCG- -5'
19009 3' -56.6 NC_004684.1 + 11162 0.74 0.255761
Target:  5'- gGUGGaCCugGCCGCCAGcGAGUGGGu- -3'
miRNA:   3'- gCGCC-GGugCGGUGGUC-UUCACUUcg -5'
19009 3' -56.6 NC_004684.1 + 28554 0.74 0.262259
Target:  5'- uCGCGGUCAccaacacccCGCCACCGGu-GUGcGGCg -3'
miRNA:   3'- -GCGCCGGU---------GCGGUGGUCuuCACuUCG- -5'
19009 3' -56.6 NC_004684.1 + 14931 0.74 0.268891
Target:  5'- gGCGGCCAUGCCGUCGGGcaucccGGUGGcGGCc -3'
miRNA:   3'- gCGCCGGUGCGGUGGUCU------UCACU-UCG- -5'
19009 3' -56.6 NC_004684.1 + 6421 0.74 0.289597
Target:  5'- cCGaGGCCgACGCCACCAgccacGAGGUGuacAGCa -3'
miRNA:   3'- -GCgCCGG-UGCGGUGGU-----CUUCACu--UCG- -5'
19009 3' -56.6 NC_004684.1 + 14651 0.74 0.289597
Target:  5'- aGCGGCCACGaCgACCuGGAG-GAcAGCg -3'
miRNA:   3'- gCGCCGGUGC-GgUGGuCUUCaCU-UCG- -5'
19009 3' -56.6 NC_004684.1 + 27766 0.73 0.311533
Target:  5'- cCGU-GCCGCGCgaccccCGCCAGGAGUgGGAGCg -3'
miRNA:   3'- -GCGcCGGUGCG------GUGGUCUUCA-CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 35401 0.73 0.31912
Target:  5'- gGUGGCCGgaugaGCCGCCgAGGAGcgcggGAGGCg -3'
miRNA:   3'- gCGCCGGUg----CGGUGG-UCUUCa----CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 61501 0.73 0.326845
Target:  5'- gGCGGCgGCGCUcgaugcgcGCCAGcAGUGAcguGCa -3'
miRNA:   3'- gCGCCGgUGCGG--------UGGUCuUCACUu--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.