miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19009 3' -56.6 NC_004684.1 + 44781 0.71 0.384749
Target:  5'- uCGgGGCCcCGCCACgAGucuGUGAGuGCg -3'
miRNA:   3'- -GCgCCGGuGCGGUGgUCuu-CACUU-CG- -5'
19009 3' -56.6 NC_004684.1 + 2059 0.72 0.350846
Target:  5'- -aCGGCCAgCGCCACguG--GUGGAGCg -3'
miRNA:   3'- gcGCCGGU-GCGGUGguCuuCACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 12769 0.72 0.350846
Target:  5'- gCGCGGCUGCGCCugCGGccaacGAG-GAcaacGGCa -3'
miRNA:   3'- -GCGCCGGUGCGGugGUC-----UUCaCU----UCG- -5'
19009 3' -56.6 NC_004684.1 + 22328 0.72 0.358286
Target:  5'- cCGUGGCC-CGCCACCcGGuacaggcGGUGGcGGCg -3'
miRNA:   3'- -GCGCCGGuGCGGUGGuCU-------UCACU-UCG- -5'
19009 3' -56.6 NC_004684.1 + 56821 0.72 0.365836
Target:  5'- aCGUGGCCaucgaccACGaCCACCuGGcgcagcuGGUGGAGCa -3'
miRNA:   3'- -GCGCCGG-------UGC-GGUGGuCU-------UCACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 4895 0.72 0.367529
Target:  5'- gGCGGCCugguCGCCACCGGccucgGcGGCa -3'
miRNA:   3'- gCGCCGGu---GCGGUGGUCuuca-CuUCG- -5'
19009 3' -56.6 NC_004684.1 + 23327 0.72 0.376072
Target:  5'- gGCcGCCAgGCCAUCGcGGAGUGgAAGCc -3'
miRNA:   3'- gCGcCGGUgCGGUGGU-CUUCAC-UUCG- -5'
19009 3' -56.6 NC_004684.1 + 24847 0.72 0.376072
Target:  5'- aGCGGUaGCGCCACCGGGccGUucGGCa -3'
miRNA:   3'- gCGCCGgUGCGGUGGUCUu-CAcuUCG- -5'
19009 3' -56.6 NC_004684.1 + 37126 0.72 0.376072
Target:  5'- gGCGuGCCgccagcgcacuGCGCCGCCAGuucugGGAGCg -3'
miRNA:   3'- gCGC-CGG-----------UGCGGUGGUCuuca-CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 56684 0.72 0.350846
Target:  5'- gGCGGUgCugGCgCAgaagcugggcCCGGggGUGAAGCu -3'
miRNA:   3'- gCGCCG-GugCG-GU----------GGUCuuCACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 57046 0.72 0.334708
Target:  5'- gGUgGGCCACGgCACCAGcgcGGUGGcaGGCa -3'
miRNA:   3'- gCG-CCGGUGCgGUGGUCu--UCACU--UCG- -5'
19009 3' -56.6 NC_004684.1 + 61501 0.73 0.326845
Target:  5'- gGCGGCgGCGCUcgaugcgcGCCAGcAGUGAcguGCa -3'
miRNA:   3'- gCGCCGgUGCGG--------UGGUCuUCACUu--CG- -5'
19009 3' -56.6 NC_004684.1 + 41440 0.8 0.112433
Target:  5'- uGCGGCgGUGCCGCCGGugucAGUGggGCu -3'
miRNA:   3'- gCGCCGgUGCGGUGGUCu---UCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 14803 0.77 0.168876
Target:  5'- gGCGGCgCGCuGuCCACCGGAcuGUGggGCg -3'
miRNA:   3'- gCGCCG-GUG-C-GGUGGUCUu-CACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 19062 0.76 0.203091
Target:  5'- uGCGGCaggcugGCGUCcUCGGAGGUGAGGCa -3'
miRNA:   3'- gCGCCGg-----UGCGGuGGUCUUCACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 30267 0.76 0.208443
Target:  5'- aCGUGGCUACGUCaaGCCAGAGGaccUGAgcGGCg -3'
miRNA:   3'- -GCGCCGGUGCGG--UGGUCUUC---ACU--UCG- -5'
19009 3' -56.6 NC_004684.1 + 26967 0.75 0.249396
Target:  5'- gGUGGCCAacgcCGCCAuCCAGGccGGUGcGAGCg -3'
miRNA:   3'- gCGCCGGU----GCGGU-GGUCU--UCAC-UUCG- -5'
19009 3' -56.6 NC_004684.1 + 11162 0.74 0.255761
Target:  5'- gGUGGaCCugGCCGCCAGcGAGUGGGu- -3'
miRNA:   3'- gCGCC-GGugCGGUGGUC-UUCACUUcg -5'
19009 3' -56.6 NC_004684.1 + 28554 0.74 0.262259
Target:  5'- uCGCGGUCAccaacacccCGCCACCGGu-GUGcGGCg -3'
miRNA:   3'- -GCGCCGGU---------GCGGUGGUCuuCACuUCG- -5'
19009 3' -56.6 NC_004684.1 + 35401 0.73 0.31912
Target:  5'- gGUGGCCGgaugaGCCGCCgAGGAGcgcggGAGGCg -3'
miRNA:   3'- gCGCCGGUg----CGGUGG-UCUUCa----CUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.