miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19009 3' -56.6 NC_004684.1 + 46162 1.12 0.000581
Target:  5'- uCGCGGCCACGCCACCAGAAGUGAAGCg -3'
miRNA:   3'- -GCGCCGGUGCGGUGGUCUUCACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 58712 0.7 0.44809
Target:  5'- gGCGGUCuGCGCCACCuGGAacAGcagcuccUGGAGCu -3'
miRNA:   3'- gCGCCGG-UGCGGUGG-UCU--UC-------ACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 31180 0.7 0.462611
Target:  5'- gGUGGCCACGCUGCgCAgcugcauccacggcuGAGGUGccAGCg -3'
miRNA:   3'- gCGCCGGUGCGGUG-GU---------------CUUCACu-UCG- -5'
19009 3' -56.6 NC_004684.1 + 65856 0.66 0.720696
Target:  5'- gGgGGCCGCugguGCCACCucggAGggGuUGAcGCc -3'
miRNA:   3'- gCgCCGGUG----CGGUGG----UCuuC-ACUuCG- -5'
19009 3' -56.6 NC_004684.1 + 64083 0.75 0.219514
Target:  5'- aGCGGCU-CGCCACCGGAgaugaccaacggAGUGuccGGCa -3'
miRNA:   3'- gCGCCGGuGCGGUGGUCU------------UCACu--UCG- -5'
19009 3' -56.6 NC_004684.1 + 14480 0.75 0.219514
Target:  5'- uGCGGCCACGCCGCCGugcuGGccgGAcGCu -3'
miRNA:   3'- gCGCCGGUGCGGUGGUcu--UCa--CUuCG- -5'
19009 3' -56.6 NC_004684.1 + 14651 0.74 0.289597
Target:  5'- aGCGGCCACGaCgACCuGGAG-GAcAGCg -3'
miRNA:   3'- gCGCCGGUGC-GgUGGuCUUCaCU-UCG- -5'
19009 3' -56.6 NC_004684.1 + 6421 0.74 0.289597
Target:  5'- cCGaGGCCgACGCCACCAgccacGAGGUGuacAGCa -3'
miRNA:   3'- -GCgCCGG-UGCGGUGGU-----CUUCACu--UCG- -5'
19009 3' -56.6 NC_004684.1 + 10237 0.72 0.35912
Target:  5'- gCGuCGGCCAcCGCCGCCAug---GAGGCg -3'
miRNA:   3'- -GC-GCCGGU-GCGGUGGUcuucaCUUCG- -5'
19009 3' -56.6 NC_004684.1 + 7979 0.7 0.439499
Target:  5'- gGCGGCCguGCGCaaCACCuGcAAGUGcAGCg -3'
miRNA:   3'- gCGCCGG--UGCG--GUGGuC-UUCACuUCG- -5'
19009 3' -56.6 NC_004684.1 + 40315 0.71 0.393557
Target:  5'- gGCGGCgaugucCACGCCugCGGAcccggcgcuggAGaUGAGGCu -3'
miRNA:   3'- gCGCCG------GUGCGGugGUCU-----------UC-ACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 547 0.72 0.35912
Target:  5'- gCGCGGUCGaggcCGCCACCgAGGAGgacaaggccGAGGCc -3'
miRNA:   3'- -GCGCCGGU----GCGGUGG-UCUUCa--------CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 16281 0.82 0.078304
Target:  5'- uCGCGGCCAUGCCuGCCAGucGUGAcuucauGGCc -3'
miRNA:   3'- -GCGCCGGUGCGG-UGGUCuuCACU------UCG- -5'
19009 3' -56.6 NC_004684.1 + 40221 0.71 0.411561
Target:  5'- cCGUGGCCAgguCGCCGCCGuagcuGGUGAucgaaucgcccAGCa -3'
miRNA:   3'- -GCGCCGGU---GCGGUGGUcu---UCACU-----------UCG- -5'
19009 3' -56.6 NC_004684.1 + 49039 0.77 0.164432
Target:  5'- aGCGGCacCGCGCCGCCGGucGgcuccgGggGCg -3'
miRNA:   3'- gCGCCG--GUGCGGUGGUCuuCa-----CuuCG- -5'
19009 3' -56.6 NC_004684.1 + 27766 0.73 0.311533
Target:  5'- cCGU-GCCGCGCgaccccCGCCAGGAGUgGGAGCg -3'
miRNA:   3'- -GCGcCGGUGCG------GUGGUCUUCA-CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 40923 0.71 0.420752
Target:  5'- gGCGGgCACGCUgucgcgGCCAGgcGUGccGCc -3'
miRNA:   3'- gCGCCgGUGCGG------UGGUCuuCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 1775 0.7 0.457743
Target:  5'- gCGUGGCUggACGCCaACCAGGAcgccgccGUGcGGCu -3'
miRNA:   3'- -GCGCCGG--UGCGG-UGGUCUU-------CACuUCG- -5'
19009 3' -56.6 NC_004684.1 + 7434 0.76 0.211713
Target:  5'- uGCGGCacgaGCGCCGCCAGcacaacgcgcacGUGggGCc -3'
miRNA:   3'- gCGCCGg---UGCGGUGGUCuu----------CACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 14931 0.74 0.268891
Target:  5'- gGCGGCCAUGCCGUCGGGcaucccGGUGGcGGCc -3'
miRNA:   3'- gCGCCGGUGCGGUGGUCU------UCACU-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.