miRNA display CGI


Results 41 - 60 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19009 3' -56.6 NC_004684.1 + 42213 0.66 0.667757
Target:  5'- gGUGGCCgACGUgGCCGccGGUGucGGCa -3'
miRNA:   3'- gCGCCGG-UGCGgUGGUcuUCACu-UCG- -5'
19009 3' -56.6 NC_004684.1 + 1782 0.66 0.667757
Target:  5'- aGCGcGCCAacaGCUGCgAGAAGggcGAGGUc -3'
miRNA:   3'- gCGC-CGGUg--CGGUGgUCUUCa--CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 42319 0.66 0.664543
Target:  5'- gGuCGGCCACGUUGCCGGugcgcgcgaacuucUGGAGCu -3'
miRNA:   3'- gC-GCCGGUGCGGUGGUCuuc-----------ACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 47397 0.67 0.661326
Target:  5'- uGCGGUCACaggaCCACCGGugccugcuggagguGGUGggGg -3'
miRNA:   3'- gCGCCGGUGc---GGUGGUCu-------------UCACuuCg -5'
19009 3' -56.6 NC_004684.1 + 5234 0.67 0.657033
Target:  5'- aCGCGaGCCcuGCGCaagGCCGGGcacGGcGAGGCg -3'
miRNA:   3'- -GCGC-CGG--UGCGg--UGGUCU---UCaCUUCG- -5'
19009 3' -56.6 NC_004684.1 + 2703 0.67 0.657033
Target:  5'- -cCGGCCugGCCgguGCCGGggGc-AAGUg -3'
miRNA:   3'- gcGCCGGugCGG---UGGUCuuCacUUCG- -5'
19009 3' -56.6 NC_004684.1 + 64996 0.67 0.657033
Target:  5'- uGCGGCU-CGCCAgCGGcguuGGUGGuguGGCc -3'
miRNA:   3'- gCGCCGGuGCGGUgGUCu---UCACU---UCG- -5'
19009 3' -56.6 NC_004684.1 + 66663 0.67 0.646286
Target:  5'- gGCGGCC-CgGUCACCGGcGGUGcccAGGUc -3'
miRNA:   3'- gCGCCGGuG-CGGUGGUCuUCAC---UUCG- -5'
19009 3' -56.6 NC_004684.1 + 47130 0.67 0.646286
Target:  5'- aGgGGCCgggaacGCGCCggGCCGGAAGUaGuaccGGCg -3'
miRNA:   3'- gCgCCGG------UGCGG--UGGUCUUCA-Cu---UCG- -5'
19009 3' -56.6 NC_004684.1 + 9044 0.67 0.646286
Target:  5'- gCGCGGCaACGCCAgCAGGGccaccgGgcGCg -3'
miRNA:   3'- -GCGCCGgUGCGGUgGUCUUca----CuuCG- -5'
19009 3' -56.6 NC_004684.1 + 47935 0.67 0.646286
Target:  5'- gCGCgGGCCAcCGCCGcCCGGGcaUGGGcGCa -3'
miRNA:   3'- -GCG-CCGGU-GCGGU-GGUCUucACUU-CG- -5'
19009 3' -56.6 NC_004684.1 + 54278 0.67 0.635528
Target:  5'- gCGCcGCCACcCgGCCGGggGUGcgcGCa -3'
miRNA:   3'- -GCGcCGGUGcGgUGGUCuuCACuu-CG- -5'
19009 3' -56.6 NC_004684.1 + 13249 0.67 0.635528
Target:  5'- cCGUGGCCAgGCCgugaccGCCAGcgcgcuGGUGGccgccgguGGCu -3'
miRNA:   3'- -GCGCCGGUgCGG------UGGUCu-----UCACU--------UCG- -5'
19009 3' -56.6 NC_004684.1 + 31290 0.67 0.635528
Target:  5'- gGCGGCUAcCGCCguACCuc-GGUGAccgGGCa -3'
miRNA:   3'- gCGCCGGU-GCGG--UGGucuUCACU---UCG- -5'
19009 3' -56.6 NC_004684.1 + 65452 0.67 0.635528
Target:  5'- gCGCGGCCaccguGCGCCgguACCAGGcccggcaggccgGGUccGGCa -3'
miRNA:   3'- -GCGCCGG-----UGCGG---UGGUCU------------UCAcuUCG- -5'
19009 3' -56.6 NC_004684.1 + 66358 0.67 0.635528
Target:  5'- gGCGGCCagggcgACGCgGgUguuGGggGUGAAGUc -3'
miRNA:   3'- gCGCCGG------UGCGgUgG---UCuuCACUUCG- -5'
19009 3' -56.6 NC_004684.1 + 19446 0.67 0.635528
Target:  5'- aGcCGuGCCgACGCCACCA--AGgccugGAAGCa -3'
miRNA:   3'- gC-GC-CGG-UGCGGUGGUcuUCa----CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 62891 0.67 0.634452
Target:  5'- -cCGGCCAUGCCguugccacggcggGCCAGGcccuggccGGUGAcgaAGCc -3'
miRNA:   3'- gcGCCGGUGCGG-------------UGGUCU--------UCACU---UCG- -5'
19009 3' -56.6 NC_004684.1 + 54278 0.67 0.624766
Target:  5'- aGCuGCCGCGCUgGCC---GGUGggGCg -3'
miRNA:   3'- gCGcCGGUGCGG-UGGucuUCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 30234 0.67 0.624766
Target:  5'- aCGUGGCCcucggcGCGCUcCCAGAAcUGGcGGCg -3'
miRNA:   3'- -GCGCCGG------UGCGGuGGUCUUcACU-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.