miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19009 3' -56.6 NC_004684.1 + 7154 0.66 0.702866
Target:  5'- gGUGGCCAcCGCCugCGGGugcaccuacaacgccGAGGCc -3'
miRNA:   3'- gCGCCGGU-GCGGugGUCUuca------------CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 59438 0.66 0.699698
Target:  5'- gGCGGCCuuGcCCACCGGu-GUGc-GCc -3'
miRNA:   3'- gCGCCGGugC-GGUGGUCuuCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 63070 0.66 0.699698
Target:  5'- gGCGGCUACcguGCCGCC----GUGcAAGCa -3'
miRNA:   3'- gCGCCGGUG---CGGUGGucuuCAC-UUCG- -5'
19009 3' -56.6 NC_004684.1 + 35777 0.66 0.699698
Target:  5'- gCGCGcGCCGCGCU-CCAuc-GUGgcGCa -3'
miRNA:   3'- -GCGC-CGGUGCGGuGGUcuuCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 53123 0.66 0.699698
Target:  5'- aCGCGGgUAggUGCCGCCGGAAaUGAccgGGUc -3'
miRNA:   3'- -GCGCCgGU--GCGGUGGUCUUcACU---UCG- -5'
19009 3' -56.6 NC_004684.1 + 20057 0.66 0.699698
Target:  5'- gGUGGCCAUGCucgacgcccaCACCGGcgacacGGUGAcGGCc -3'
miRNA:   3'- gCGCCGGUGCG----------GUGGUCu-----UCACU-UCG- -5'
19009 3' -56.6 NC_004684.1 + 14574 0.66 0.699698
Target:  5'- gGUGcGCCgGgGCCACC-GAGGaGGAGCg -3'
miRNA:   3'- gCGC-CGG-UgCGGUGGuCUUCaCUUCG- -5'
19009 3' -56.6 NC_004684.1 + 52095 0.66 0.698641
Target:  5'- -cCGGCCACGUCgACCAGGcccagcaGGUGcaccGCg -3'
miRNA:   3'- gcGCCGGUGCGG-UGGUCU-------UCACuu--CG- -5'
19009 3' -56.6 NC_004684.1 + 29111 0.66 0.6891
Target:  5'- cCGUGaGCUGCGCCagACCAGcacGUGcGAGCu -3'
miRNA:   3'- -GCGC-CGGUGCGG--UGGUCuu-CAC-UUCG- -5'
19009 3' -56.6 NC_004684.1 + 43226 0.66 0.68591
Target:  5'- gGCGGCaC-CGCCugCGGAcccugcaccggagcGGUGcgcAGCg -3'
miRNA:   3'- gCGCCG-GuGCGGugGUCU--------------UCACu--UCG- -5'
19009 3' -56.6 NC_004684.1 + 9567 0.66 0.67845
Target:  5'- gGCGGCCAgCaCCGCCGGGAcc-AGGCc -3'
miRNA:   3'- gCGCCGGU-GcGGUGGUCUUcacUUCG- -5'
19009 3' -56.6 NC_004684.1 + 12061 0.66 0.67845
Target:  5'- gGCucGCCugGCCGCCGagcgcgacGAGGUGcuGGCc -3'
miRNA:   3'- gCGc-CGGugCGGUGGU--------CUUCACu-UCG- -5'
19009 3' -56.6 NC_004684.1 + 17293 0.66 0.67845
Target:  5'- gGgGGCCA-GCCGCCuGGucguGGUGGAcuGCg -3'
miRNA:   3'- gCgCCGGUgCGGUGGuCU----UCACUU--CG- -5'
19009 3' -56.6 NC_004684.1 + 63977 0.66 0.67845
Target:  5'- gGCGGCCAgCGgUGCCAG-GGUGccGUu -3'
miRNA:   3'- gCGCCGGU-GCgGUGGUCuUCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 46259 0.66 0.67845
Target:  5'- gCGCGGUgACaCCGCCGGAcacGUGGAa- -3'
miRNA:   3'- -GCGCCGgUGcGGUGGUCUu--CACUUcg -5'
19009 3' -56.6 NC_004684.1 + 41088 0.66 0.67845
Target:  5'- gGCGGCCugGCCgagcugcguACCGauggccGAGGUcaccgaauccuuGAGGCc -3'
miRNA:   3'- gCGCCGGugCGG---------UGGU------CUUCA------------CUUCG- -5'
19009 3' -56.6 NC_004684.1 + 43850 0.66 0.667757
Target:  5'- cCGCGaCCgAUGCCGCCgAGGuuGGUGAgcaGGCu -3'
miRNA:   3'- -GCGCcGG-UGCGGUGG-UCU--UCACU---UCG- -5'
19009 3' -56.6 NC_004684.1 + 17369 0.66 0.667757
Target:  5'- -cCGGCCACGCUGCCGccGAcGGUGc-GCa -3'
miRNA:   3'- gcGCCGGUGCGGUGGU--CU-UCACuuCG- -5'
19009 3' -56.6 NC_004684.1 + 63155 0.66 0.667757
Target:  5'- uGCGGCUccugcGCGCCGCgcaggcgcaugCAGucGUGGcuGGCg -3'
miRNA:   3'- gCGCCGG-----UGCGGUG-----------GUCuuCACU--UCG- -5'
19009 3' -56.6 NC_004684.1 + 42213 0.66 0.667757
Target:  5'- gGUGGCCgACGUgGCCGccGGUGucGGCa -3'
miRNA:   3'- gCGCCGG-UGCGgUGGUcuUCACu-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.