miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19010 3' -63.7 NC_004684.1 + 45395 1.1 0.000169
Target:  5'- cGGCCCCAUGGCCUCCUGGACCGCGCGg -3'
miRNA:   3'- -CCGGGGUACCGGAGGACCUGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 7320 0.78 0.04974
Target:  5'- aGGCCCgCAcgGGCCgCC-GGGCCGCGCGc -3'
miRNA:   3'- -CCGGG-GUa-CCGGaGGaCCUGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 53718 0.76 0.072569
Target:  5'- cGGCCaCCAUG---UCCUGGACCGUGCGc -3'
miRNA:   3'- -CCGG-GGUACcggAGGACCUGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 58341 0.74 0.108087
Target:  5'- cGCCCgGUGGcCCUgCUGGcguuGCCGCGCc -3'
miRNA:   3'- cCGGGgUACC-GGAgGACC----UGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 23686 0.74 0.110962
Target:  5'- cGGCCCggaccagagCGUGGCCUCCaaccUGGGCgGCgGCGc -3'
miRNA:   3'- -CCGGG---------GUACCGGAGG----ACCUGgCG-CGC- -5'
19010 3' -63.7 NC_004684.1 + 33964 0.73 0.116929
Target:  5'- cGGCCCCAUGGCCgUC-GGACCuacCGCc -3'
miRNA:   3'- -CCGGGGUACCGGaGGaCCUGGc--GCGc -5'
19010 3' -63.7 NC_004684.1 + 28066 0.73 0.120024
Target:  5'- cGGCCCCggcgguGUGGCCgggCC---GCCGCGCGa -3'
miRNA:   3'- -CCGGGG------UACCGGa--GGaccUGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 1495 0.72 0.140244
Target:  5'- cGGCCCUgGUGGCCaaCCUGcGcGCCGCGCu -3'
miRNA:   3'- -CCGGGG-UACCGGa-GGAC-C-UGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 5006 0.72 0.151486
Target:  5'- gGGCCCgGUGcCgCUCCugaUGGACCGCGaCGa -3'
miRNA:   3'- -CCGGGgUACcG-GAGG---ACCUGGCGC-GC- -5'
19010 3' -63.7 NC_004684.1 + 484 0.72 0.151486
Target:  5'- uGGCCgCCAaGGCCgcgCCgaaGGCCGCGCc -3'
miRNA:   3'- -CCGG-GGUaCCGGa--GGac-CUGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 54207 0.72 0.151486
Target:  5'- aGCCaCCAggucgUGGCUgUCCUGGACCagguGCGCGu -3'
miRNA:   3'- cCGG-GGU-----ACCGG-AGGACCUGG----CGCGC- -5'
19010 3' -63.7 NC_004684.1 + 51172 0.71 0.15943
Target:  5'- uGG-CCgAUGcGCCgggCCaUGGACCGCGCGc -3'
miRNA:   3'- -CCgGGgUAC-CGGa--GG-ACCUGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 8996 0.71 0.163541
Target:  5'- cGGCCgggCCAaGGCCUCCacgcgcGGuGCCGUGCGg -3'
miRNA:   3'- -CCGG---GGUaCCGGAGGa-----CC-UGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 16591 0.71 0.167748
Target:  5'- cGCCgCCAgcgucugcuggUGGCCUCCUGcaugcucACCGCGCu -3'
miRNA:   3'- cCGG-GGU-----------ACCGGAGGACc------UGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 13761 0.71 0.172051
Target:  5'- uGCUCCAgcgcaugcgGGUgUCC-GGGCCGCGCGu -3'
miRNA:   3'- cCGGGGUa--------CCGgAGGaCCUGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 53403 0.71 0.176452
Target:  5'- uGUCCagGUGGCCgggcuggCCUGcGCCGCGCGa -3'
miRNA:   3'- cCGGGg-UACCGGa------GGACcUGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 8668 0.71 0.180953
Target:  5'- uGCCCgGUgcGGCCaggugCCUGuGGCCGUGCGu -3'
miRNA:   3'- cCGGGgUA--CCGGa----GGAC-CUGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 23563 0.7 0.185556
Target:  5'- cGGCCUgGacaGCCUgCcGGGCCGCGCGa -3'
miRNA:   3'- -CCGGGgUac-CGGAgGaCCUGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 24242 0.7 0.199492
Target:  5'- aGGCcaaCCCGuacauccUGGCCcgCCUGGGCaaguCGCGCGa -3'
miRNA:   3'- -CCG---GGGU-------ACCGGa-GGACCUG----GCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 7093 0.7 0.199988
Target:  5'- aGGCCCUGgaGGCCgCCgaGGACCGgGCc -3'
miRNA:   3'- -CCGGGGUa-CCGGaGGa-CCUGGCgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.