miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19010 3' -63.7 NC_004684.1 + 484 0.72 0.151486
Target:  5'- uGGCCgCCAaGGCCgcgCCgaaGGCCGCGCc -3'
miRNA:   3'- -CCGG-GGUaCCGGa--GGac-CUGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 753 0.68 0.267751
Target:  5'- cGCCCUGgcGGCgCUCCUGGAcaCCGC-CGa -3'
miRNA:   3'- cCGGGGUa-CCG-GAGGACCU--GGCGcGC- -5'
19010 3' -63.7 NC_004684.1 + 757 0.66 0.37697
Target:  5'- aGGCCaUCGUGGCCaCCaaGGCCGCagGCa -3'
miRNA:   3'- -CCGG-GGUACCGGaGGacCUGGCG--CGc -5'
19010 3' -63.7 NC_004684.1 + 1107 0.69 0.249236
Target:  5'- gGGCaCCCgcaacGUGGCCgUCCgcugGGacgacGCCGCGCu -3'
miRNA:   3'- -CCG-GGG-----UACCGG-AGGa---CC-----UGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 1254 0.66 0.385238
Target:  5'- cGGCCCCGgcccagaugcgcUGGCUgguggccauguUCC-GGuACgCGCGCGa -3'
miRNA:   3'- -CCGGGGU------------ACCGG-----------AGGaCC-UG-GCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 1495 0.72 0.140244
Target:  5'- cGGCCCUgGUGGCCaaCCUGcGcGCCGCGCu -3'
miRNA:   3'- -CCGGGG-UACCGGa-GGAC-C-UGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 1925 0.67 0.337461
Target:  5'- cGGCCUgCcgGGCCUgguaCCggcgcacgGuGGCCGCGCGc -3'
miRNA:   3'- -CCGGG-GuaCCGGA----GGa-------C-CUGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 2055 0.7 0.199988
Target:  5'- gGGCCgCCAucgUGGCCUgCCUGGcgcugGCCGUGg- -3'
miRNA:   3'- -CCGG-GGU---ACCGGA-GGACC-----UGGCGCgc -5'
19010 3' -63.7 NC_004684.1 + 3489 0.66 0.37697
Target:  5'- gGGCCgcaCCGUGGCCgCCaGGACgC-CGCa -3'
miRNA:   3'- -CCGG---GGUACCGGaGGaCCUG-GcGCGc -5'
19010 3' -63.7 NC_004684.1 + 4473 0.66 0.360798
Target:  5'- cGGCUUCGUcaccGGCCagggCCUGGcCCGcCGUGg -3'
miRNA:   3'- -CCGGGGUA----CCGGa---GGACCuGGC-GCGC- -5'
19010 3' -63.7 NC_004684.1 + 4954 0.66 0.360798
Target:  5'- uGGCaggaCUAcgaGGCCUUC-GGACUGCGCa -3'
miRNA:   3'- -CCGg---GGUa--CCGGAGGaCCUGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 5006 0.72 0.151486
Target:  5'- gGGCCCgGUGcCgCUCCugaUGGACCGCGaCGa -3'
miRNA:   3'- -CCGGGgUACcG-GAGG---ACCUGGCGC-GC- -5'
19010 3' -63.7 NC_004684.1 + 5939 0.68 0.267751
Target:  5'- uGGCCaCCGggcGGUCcaaCCUGG-CCGCGCc -3'
miRNA:   3'- -CCGG-GGUa--CCGGa--GGACCuGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 7093 0.7 0.199988
Target:  5'- aGGCCCUGgaGGCCgCCgaGGACCGgGCc -3'
miRNA:   3'- -CCGGGGUa-CCGGaGGa-CCUGGCgCGc -5'
19010 3' -63.7 NC_004684.1 + 7320 0.78 0.04974
Target:  5'- aGGCCCgCAcgGGCCgCC-GGGCCGCGCGc -3'
miRNA:   3'- -CCGGG-GUa-CCGGaGGaCCUGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 7542 0.69 0.239801
Target:  5'- uGGCCgCCGUGGCggcgUUCUGGuucgccuacaccggcACCGCGCc -3'
miRNA:   3'- -CCGG-GGUACCGg---AGGACC---------------UGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 7563 0.67 0.329929
Target:  5'- cGGCCCCggGUGGCgCUggugcggCUGGugCGCgGCa -3'
miRNA:   3'- -CCGGGG--UACCG-GAg------GACCugGCG-CGc -5'
19010 3' -63.7 NC_004684.1 + 7902 0.68 0.255288
Target:  5'- uGCUCCGUuggGGCCg-CUGG-CCGCGCa -3'
miRNA:   3'- cCGGGGUA---CCGGagGACCuGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 8668 0.71 0.180953
Target:  5'- uGCCCgGUgcGGCCaggugCCUGuGGCCGUGCGu -3'
miRNA:   3'- cCGGGgUA--CCGGa----GGAC-CUGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 8996 0.71 0.163541
Target:  5'- cGGCCgggCCAaGGCCUCCacgcgcGGuGCCGUGCGg -3'
miRNA:   3'- -CCGG---GGUaCCGGAGGa-----CC-UGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.