miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 5' -58.3 NC_004684.1 + 58417 0.66 0.592209
Target:  5'- cGCCGGAacccCGCCGguugccuccggccCCGUGCCGGacCCGAc -3'
miRNA:   3'- uCGGCUU----GUGGC-------------GGCAUGGCU--GGCUa -5'
19011 5' -58.3 NC_004684.1 + 9883 0.66 0.589038
Target:  5'- cGCCGcGCaggagcagGCCGCCGacgagugguccggGCUGACCGAg -3'
miRNA:   3'- uCGGCuUG--------UGGCGGCa------------UGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 48611 0.66 0.582706
Target:  5'- --aCGAACaACCcCCGUACCGGCCu-- -3'
miRNA:   3'- ucgGCUUG-UGGcGGCAUGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 64939 0.66 0.582706
Target:  5'- cGCCGAGCugGCCGCCcaGgCGGgCGAUg -3'
miRNA:   3'- uCGGCUUG--UGGCGGcaUgGCUgGCUA- -5'
19011 5' -58.3 NC_004684.1 + 1149 0.66 0.582706
Target:  5'- uGCCGGGCguGCCGaCCGUGCacuuugguGCCGAg -3'
miRNA:   3'- uCGGCUUG--UGGC-GGCAUGgc------UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 36744 0.66 0.582706
Target:  5'- cGCCGucccggcgcuGACGCCGCCaggGCCGcgcCCGGUg -3'
miRNA:   3'- uCGGC----------UUGUGGCGGca-UGGCu--GGCUA- -5'
19011 5' -58.3 NC_004684.1 + 385 0.66 0.582706
Target:  5'- uGCCGGucaggauCACCGCCGUggcgggcaaGCUGGgCGAc -3'
miRNA:   3'- uCGGCUu------GUGGCGGCA---------UGGCUgGCUa -5'
19011 5' -58.3 NC_004684.1 + 27065 0.66 0.582706
Target:  5'- uGCCcAGCGCCgagGUCGUGCCuGCCGGg -3'
miRNA:   3'- uCGGcUUGUGG---CGGCAUGGcUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 59816 0.66 0.582706
Target:  5'- uGCCGcGCACCaGCCGcACCagcgccacccggGGCCGGUc -3'
miRNA:   3'- uCGGCuUGUGG-CGGCaUGG------------CUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 55154 0.67 0.572183
Target:  5'- -aCCGGAuCGCCGCCGUcgggcggcacguACCGGaacCCGGUg -3'
miRNA:   3'- ucGGCUU-GUGGCGGCA------------UGGCU---GGCUA- -5'
19011 5' -58.3 NC_004684.1 + 55553 0.67 0.572183
Target:  5'- cGCCGcugGCCGCCGUgGCCcgguGGCCGGg -3'
miRNA:   3'- uCGGCuugUGGCGGCA-UGG----CUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 21599 0.67 0.572183
Target:  5'- cGCCGAGCGCgaacaggucuaCGaCCgGUACCGcACCGGc -3'
miRNA:   3'- uCGGCUUGUG-----------GC-GG-CAUGGC-UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 30997 0.67 0.572183
Target:  5'- cGCUGAugGCgcaGCUGggccugacGCCGACCGGUg -3'
miRNA:   3'- uCGGCUugUGg--CGGCa-------UGGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 33107 0.67 0.572183
Target:  5'- cGCCGGacACGCCGCCcuUGCUGACgGu- -3'
miRNA:   3'- uCGGCU--UGUGGCGGc-AUGGCUGgCua -5'
19011 5' -58.3 NC_004684.1 + 29258 0.67 0.572183
Target:  5'- aGGCau--CACCGCCG-ACCG-CCGAc -3'
miRNA:   3'- -UCGgcuuGUGGCGGCaUGGCuGGCUa -5'
19011 5' -58.3 NC_004684.1 + 66691 0.67 0.572183
Target:  5'- aGGCCGucCACCGgCGgcugACCucggGGCCGAg -3'
miRNA:   3'- -UCGGCuuGUGGCgGCa---UGG----CUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 55715 0.67 0.565892
Target:  5'- cAGCUGcuuGCgcggcggucacguugGCCGCCGUGCUggcguGGCCGAUg -3'
miRNA:   3'- -UCGGCu--UG---------------UGGCGGCAUGG-----CUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 19593 0.67 0.561707
Target:  5'- cAGuuGuuCGCCGCCGagaacauccugGCCGACUGAc -3'
miRNA:   3'- -UCggCuuGUGGCGGCa----------UGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 18055 0.67 0.561707
Target:  5'- aGGCgaGGACgACUGCCcgGUGCCGACCa-- -3'
miRNA:   3'- -UCGg-CUUG-UGGCGG--CAUGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 13098 0.67 0.561707
Target:  5'- cGCgCGGugcACGCCGCCccACCGGCCa-- -3'
miRNA:   3'- uCG-GCU---UGUGGCGGcaUGGCUGGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.