miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 5' -58.3 NC_004684.1 + 48433 0.66 0.614472
Target:  5'- -aCCGcucCACCGCCuUGCCGACCu-- -3'
miRNA:   3'- ucGGCuu-GUGGCGGcAUGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 7705 0.66 0.614472
Target:  5'- aGGCCGu-CGCCGUgGcGCUGGCCGu- -3'
miRNA:   3'- -UCGGCuuGUGGCGgCaUGGCUGGCua -5'
19011 5' -58.3 NC_004684.1 + 43908 0.66 0.614472
Target:  5'- aGGCCGGAaagcggucacCACCGCCGUcacGCUG-UCGGg -3'
miRNA:   3'- -UCGGCUU----------GUGGCGGCA---UGGCuGGCUa -5'
19011 5' -58.3 NC_004684.1 + 38473 0.66 0.614472
Target:  5'- cGCCGAcaaggcagGCACCGgCGUcagcaaggccACCGacGCCGAc -3'
miRNA:   3'- uCGGCU--------UGUGGCgGCA----------UGGC--UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 49383 0.66 0.614472
Target:  5'- uGCCGAuguUGCCGCCGUACuCGGUCa-- -3'
miRNA:   3'- uCGGCUu--GUGGCGGCAUG-GCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 27942 0.66 0.614472
Target:  5'- cGCCGGagcugGCACCGUgGUACgucGCCGAa -3'
miRNA:   3'- uCGGCU-----UGUGGCGgCAUGgc-UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 61484 0.66 0.61341
Target:  5'- cAGCCGGucgugcgcgaucaGCGCCGCCGccACCcggucaGGCUGGUg -3'
miRNA:   3'- -UCGGCU-------------UGUGGCGGCa-UGG------CUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 57725 0.66 0.603858
Target:  5'- cGCCGuACACCGCgCGcuucaccGCCGcCCGGa -3'
miRNA:   3'- uCGGCuUGUGGCG-GCa------UGGCuGGCUa -5'
19011 5' -58.3 NC_004684.1 + 17659 0.66 0.603858
Target:  5'- uGCCGAGCguGCCGCUGaguuugaacGCCGcgccGCCGAg -3'
miRNA:   3'- uCGGCUUG--UGGCGGCa--------UGGC----UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 7510 0.66 0.603858
Target:  5'- cGCUGGcCGCCGCgcgCGUGacCCGACUGAUc -3'
miRNA:   3'- uCGGCUuGUGGCG---GCAU--GGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 40224 0.66 0.603858
Target:  5'- uGGCCaGGuCGCCGCCGUAgCugguGAUCGAa -3'
miRNA:   3'- -UCGG-CUuGUGGCGGCAUgG----CUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 511 0.66 0.603858
Target:  5'- cGCCGAaggucgccaccgGCGCUGaCGUGCUGGCCa-- -3'
miRNA:   3'- uCGGCU------------UGUGGCgGCAUGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 40526 0.66 0.603858
Target:  5'- cGCUccuGCGCCGCCuccugcucgcugGUGCuCGACCGGUc -3'
miRNA:   3'- uCGGcu-UGUGGCGG------------CAUG-GCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 35109 0.66 0.603858
Target:  5'- cGCCGAGCGCCaauGCaccucuucGCCGACCGc- -3'
miRNA:   3'- uCGGCUUGUGG---CGgca-----UGGCUGGCua -5'
19011 5' -58.3 NC_004684.1 + 30600 0.66 0.593267
Target:  5'- uAGCUGAccgaGCCGCC--GCCGACCa-- -3'
miRNA:   3'- -UCGGCUug--UGGCGGcaUGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 30520 0.66 0.593267
Target:  5'- gGGUCGGugaaguuCACCGCCGacggcuCCGACCa-- -3'
miRNA:   3'- -UCGGCUu------GUGGCGGCau----GGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 26705 0.66 0.593267
Target:  5'- cAGCUGAAguUCGUCGccaccuUGCUGGCCGAg -3'
miRNA:   3'- -UCGGCUUguGGCGGC------AUGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 23935 0.66 0.593267
Target:  5'- cGCCGcACcugcuGCCGCCccGCCGcACCGAc -3'
miRNA:   3'- uCGGCuUG-----UGGCGGcaUGGC-UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 235 0.66 0.593267
Target:  5'- uGCCGuACAUCGCCGccacgaucaucgUGCaGGCCGAc -3'
miRNA:   3'- uCGGCuUGUGGCGGC------------AUGgCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 63937 0.66 0.593267
Target:  5'- cGCCGAACugGgUGCCGUACCacauGGCCa-- -3'
miRNA:   3'- uCGGCUUG--UgGCGGCAUGG----CUGGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.