miRNA display CGI


Results 21 - 40 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 5' -58.3 NC_004684.1 + 50693 0.74 0.222865
Target:  5'- cGCCGAugAcCCGCCG-ACCG-CCGAc -3'
miRNA:   3'- uCGGCUugU-GGCGGCaUGGCuGGCUa -5'
19011 5' -58.3 NC_004684.1 + 35444 0.74 0.228591
Target:  5'- cGCCGGACAgCGggcgaCCGUugCGGCCGGg -3'
miRNA:   3'- uCGGCUUGUgGC-----GGCAugGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 26323 0.73 0.234441
Target:  5'- cGCCGG--GCCGCCGauUGCCGACgCGGUg -3'
miRNA:   3'- uCGGCUugUGGCGGC--AUGGCUG-GCUA- -5'
19011 5' -58.3 NC_004684.1 + 22536 0.73 0.240416
Target:  5'- gGGCgGGAuCGCCGCCGcGCCGACggCGAUg -3'
miRNA:   3'- -UCGgCUU-GUGGCGGCaUGGCUG--GCUA- -5'
19011 5' -58.3 NC_004684.1 + 28899 0.73 0.246517
Target:  5'- cGCCGuGGCgACCGCCGcugAUCGACCGGa -3'
miRNA:   3'- uCGGC-UUG-UGGCGGCa--UGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 57912 0.73 0.246517
Target:  5'- cGGCC-AGCACCGCCGggACCaGGCCGu- -3'
miRNA:   3'- -UCGGcUUGUGGCGGCa-UGG-CUGGCua -5'
19011 5' -58.3 NC_004684.1 + 43965 0.73 0.246517
Target:  5'- aGGCCGAGCAUCaGCCGUGcgcgggcguacCCGGCCa-- -3'
miRNA:   3'- -UCGGCUUGUGG-CGGCAU-----------GGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 40529 0.73 0.252747
Target:  5'- cGCCuGGGCACCGCUG-ACCaaGGCCGGUg -3'
miRNA:   3'- uCGG-CUUGUGGCGGCaUGG--CUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 37685 0.73 0.252747
Target:  5'- cGGCCGGGC-CCGCacgGUACCGauGCCGGg -3'
miRNA:   3'- -UCGGCUUGuGGCGg--CAUGGC--UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 40470 0.73 0.252747
Target:  5'- uGCCGAAgGCCGCC--ACCG-CCGAg -3'
miRNA:   3'- uCGGCUUgUGGCGGcaUGGCuGGCUa -5'
19011 5' -58.3 NC_004684.1 + 25849 0.73 0.256546
Target:  5'- gAGCCGGACGCCaggccggggaucgcGCCGUACacaccguUGACCGGc -3'
miRNA:   3'- -UCGGCUUGUGG--------------CGGCAUG-------GCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 54272 0.73 0.259105
Target:  5'- cAGCC-AGCGCCGCCac-CCGGCCGGg -3'
miRNA:   3'- -UCGGcUUGUGGCGGcauGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 9372 0.73 0.259105
Target:  5'- gAGCCGGACACCgaggacgacGCCgGUACCGACgacagCGAUc -3'
miRNA:   3'- -UCGGCUUGUGG---------CGG-CAUGGCUG-----GCUA- -5'
19011 5' -58.3 NC_004684.1 + 10888 0.73 0.259105
Target:  5'- cGCCGGAUGCCGCUacgGUGCCGACg--- -3'
miRNA:   3'- uCGGCUUGUGGCGG---CAUGGCUGgcua -5'
19011 5' -58.3 NC_004684.1 + 66771 0.73 0.262982
Target:  5'- cGCCGGgugggaagaccuggGCACCGCCGgugACCGggccgccGCCGAg -3'
miRNA:   3'- uCGGCU--------------UGUGGCGGCa--UGGC-------UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 44842 0.73 0.265593
Target:  5'- cGCCGGuacacgauGCACgGCCuaUACCGACCGAa -3'
miRNA:   3'- uCGGCU--------UGUGgCGGc-AUGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 53686 0.72 0.278964
Target:  5'- gGGCCgGAACACCugGuuG-GCCGACCGGUa -3'
miRNA:   3'- -UCGG-CUUGUGG--CggCaUGGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 24623 0.72 0.285153
Target:  5'- cGGcCCGGcACACCGCCGUagauggcACCG-CCGAa -3'
miRNA:   3'- -UC-GGCU-UGUGGCGGCA-------UGGCuGGCUa -5'
19011 5' -58.3 NC_004684.1 + 31286 0.72 0.285848
Target:  5'- cGUCGGcgGCuACCGCCGUACCucgguGACCGGg -3'
miRNA:   3'- uCGGCU--UG-UGGCGGCAUGG-----CUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 3532 0.72 0.285848
Target:  5'- cGgCGAACACCGUgGUGCCG-CUGAc -3'
miRNA:   3'- uCgGCUUGUGGCGgCAUGGCuGGCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.