miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 5' -58.3 NC_004684.1 + 22666 1.06 0.001132
Target:  5'- aAGCCGAACACCGCCGUACCGACCGAUg -3'
miRNA:   3'- -UCGGCUUGUGGCGGCAUGGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 52999 0.83 0.051553
Target:  5'- cGGCC--ACGCCGCCGUGCUGGCCGGa -3'
miRNA:   3'- -UCGGcuUGUGGCGGCAUGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 21067 0.83 0.053024
Target:  5'- gGGCCGAccuGCGCCGCCGcuCCGACCGGg -3'
miRNA:   3'- -UCGGCU---UGUGGCGGCauGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 49253 0.79 0.095141
Target:  5'- cGCCGAgACugCGCCGUACUGcCCGGUg -3'
miRNA:   3'- uCGGCU-UGugGCGGCAUGGCuGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 3704 0.79 0.095141
Target:  5'- cGCC-AGCGCCGCCGcGCUGGCCGGUa -3'
miRNA:   3'- uCGGcUUGUGGCGGCaUGGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 49304 0.78 0.1091
Target:  5'- cGGCCcGGCACCGaCCGacugGCCGACCGAg -3'
miRNA:   3'- -UCGGcUUGUGGC-GGCa---UGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 57915 0.78 0.124625
Target:  5'- uGGCCGGGCugACCGCCGaugacauUGCCGACCGc- -3'
miRNA:   3'- -UCGGCUUG--UGGCGGC-------AUGGCUGGCua -5'
19011 5' -58.3 NC_004684.1 + 10013 0.78 0.124962
Target:  5'- uGCCGGAC-CUGCCGcgcGCCGACCGGg -3'
miRNA:   3'- uCGGCUUGuGGCGGCa--UGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 57558 0.78 0.124962
Target:  5'- cGCCGAGCugCGCCG-GuuGGCCGAc -3'
miRNA:   3'- uCGGCUUGugGCGGCaUggCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 42631 0.77 0.146808
Target:  5'- aAGCCGAACGCCGUCagcacGCCGACCa-- -3'
miRNA:   3'- -UCGGCUUGUGGCGGca---UGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 37624 0.76 0.150772
Target:  5'- uGCCGAACGCCGUCGgugcGCUGGCCa-- -3'
miRNA:   3'- uCGGCUUGUGGCGGCa---UGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 3825 0.76 0.154832
Target:  5'- uGCUGGGCGCguuCGgCGUGCCGACCGAc -3'
miRNA:   3'- uCGGCUUGUG---GCgGCAUGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 28157 0.76 0.158992
Target:  5'- cGGcCCGGccACACCGCCGggGCCGACCa-- -3'
miRNA:   3'- -UC-GGCU--UGUGGCGGCa-UGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 65695 0.76 0.167615
Target:  5'- cGCCaaccaGGACGCCGCCGUGCggcucaUGACCGAg -3'
miRNA:   3'- uCGG-----CUUGUGGCGGCAUG------GCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 25878 0.75 0.172082
Target:  5'- uGGUgaCGAACACCGgCGUGCCG-CCGGUg -3'
miRNA:   3'- -UCG--GCUUGUGGCgGCAUGGCuGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 2686 0.75 0.172082
Target:  5'- cGCCGGGCACCGCaucccCGgcCUGGCCGGUg -3'
miRNA:   3'- uCGGCUUGUGGCG-----GCauGGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 12859 0.75 0.186126
Target:  5'- aGGCCGAGgccgcCACCGCCGagGCCGccGCCGGg -3'
miRNA:   3'- -UCGGCUU-----GUGGCGGCa-UGGC--UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 19319 0.75 0.191027
Target:  5'- aGGCCGcauACGCCGCCGccgugGCCGAgCGGg -3'
miRNA:   3'- -UCGGCu--UGUGGCGGCa----UGGCUgGCUa -5'
19011 5' -58.3 NC_004684.1 + 33887 0.74 0.211237
Target:  5'- cGCCGAACcgcucgaugacuuGCCGCCG-ACCG-CCGAg -3'
miRNA:   3'- uCGGCUUG-------------UGGCGGCaUGGCuGGCUa -5'
19011 5' -58.3 NC_004684.1 + 24883 0.74 0.217261
Target:  5'- uGCCGAcCGCCuugGCCGUAUCGACCa-- -3'
miRNA:   3'- uCGGCUuGUGG---CGGCAUGGCUGGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.