miRNA display CGI


Results 1 - 20 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 5' -58.3 NC_004684.1 + 19 0.68 0.480327
Target:  5'- gAGCCGGACACCggggGCgGUACCaGGgguccCCGAa -3'
miRNA:   3'- -UCGGCUUGUGG----CGgCAUGG-CU-----GGCUa -5'
19011 5' -58.3 NC_004684.1 + 235 0.66 0.593267
Target:  5'- uGCCGuACAUCGCCGccacgaucaucgUGCaGGCCGAc -3'
miRNA:   3'- uCGGCuUGUGGCGGC------------AUGgCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 385 0.66 0.582706
Target:  5'- uGCCGGucaggauCACCGCCGUggcgggcaaGCUGGgCGAc -3'
miRNA:   3'- uCGGCUu------GUGGCGGCA---------UGGCUgGCUa -5'
19011 5' -58.3 NC_004684.1 + 473 0.67 0.530622
Target:  5'- cGCCGagguuGugGCCGCCaagGCCGcGCCGAa -3'
miRNA:   3'- uCGGC-----UugUGGCGGca-UGGC-UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 511 0.66 0.603858
Target:  5'- cGCCGAaggucgccaccgGCGCUGaCGUGCUGGCCa-- -3'
miRNA:   3'- uCGGCU------------UGUGGCgGCAUGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 635 0.67 0.561707
Target:  5'- cGCCGAGguCGCCgggguGCUGUACCGGgUGGUg -3'
miRNA:   3'- uCGGCUU--GUGG-----CGGCAUGGCUgGCUA- -5'
19011 5' -58.3 NC_004684.1 + 1149 0.66 0.582706
Target:  5'- uGCCGGGCguGCCGaCCGUGCacuuugguGCCGAg -3'
miRNA:   3'- uCGGCUUG--UGGC-GGCAUGgc------UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 1381 0.71 0.345743
Target:  5'- uGGCCGAcgccaAgGCCGCCGUugcACUGGCCa-- -3'
miRNA:   3'- -UCGGCU-----UgUGGCGGCA---UGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 2573 0.67 0.551283
Target:  5'- cGCCGAG-GCCGgUGUGCCcgacccGACCGAg -3'
miRNA:   3'- uCGGCUUgUGGCgGCAUGG------CUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 2686 0.75 0.172082
Target:  5'- cGCCGGGCACCGCaucccCGgcCUGGCCGGUg -3'
miRNA:   3'- uCGGCUUGUGGCG-----GCauGGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 2794 0.7 0.378899
Target:  5'- cAGCCGGA-ACCGCaacuggucgaCGUACCgGGCCGGUa -3'
miRNA:   3'- -UCGGCUUgUGGCG----------GCAUGG-CUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 3358 0.69 0.405128
Target:  5'- aGGCCG-ACACCGCCG-AC--ACCGAg -3'
miRNA:   3'- -UCGGCuUGUGGCGGCaUGgcUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 3504 0.69 0.405128
Target:  5'- cGCCaGGACGCCGCaaucGCCGACgGGUg -3'
miRNA:   3'- uCGG-CUUGUGGCGgca-UGGCUGgCUA- -5'
19011 5' -58.3 NC_004684.1 + 3532 0.72 0.285848
Target:  5'- cGgCGAACACCGUgGUGCCG-CUGAc -3'
miRNA:   3'- uCgGCUUGUGGCGgCAUGGCuGGCUa -5'
19011 5' -58.3 NC_004684.1 + 3704 0.79 0.095141
Target:  5'- cGCC-AGCGCCGCCGcGCUGGCCGGUa -3'
miRNA:   3'- uCGGcUUGUGGCGGCaUGGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 3800 0.68 0.460863
Target:  5'- aGGCgGuaacCACCGCCGcGCCGcgcagGCCGAUg -3'
miRNA:   3'- -UCGgCuu--GUGGCGGCaUGGC-----UGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 3825 0.76 0.154832
Target:  5'- uGCUGGGCGCguuCGgCGUGCCGACCGAc -3'
miRNA:   3'- uCGGCUUGUG---GCgGCAUGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 4161 0.66 0.625101
Target:  5'- gGGCCGAcgcccggcaACgaGCCGCCGg--UGGCCGAg -3'
miRNA:   3'- -UCGGCU---------UG--UGGCGGCaugGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 4451 0.67 0.530622
Target:  5'- cAGCUGGAgGCCGCaCGUGCgcgcgaGGCCGu- -3'
miRNA:   3'- -UCGGCUUgUGGCG-GCAUGg-----CUGGCua -5'
19011 5' -58.3 NC_004684.1 + 5960 0.67 0.530622
Target:  5'- uGGCC--GCGCCGgUGagcgACCGGCCGAg -3'
miRNA:   3'- -UCGGcuUGUGGCgGCa---UGGCUGGCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.