miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 5' -58.3 NC_004684.1 + 9558 0.71 0.353834
Target:  5'- gAGCCGGuGCGCCGCgaacaCGUgGCCGACCuGAUc -3'
miRNA:   3'- -UCGGCU-UGUGGCG-----GCA-UGGCUGG-CUA- -5'
19011 5' -58.3 NC_004684.1 + 43965 0.73 0.246517
Target:  5'- aGGCCGAGCAUCaGCCGUGcgcgggcguacCCGGCCa-- -3'
miRNA:   3'- -UCGGCUUGUGG-CGGCAU-----------GGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 9372 0.73 0.259105
Target:  5'- gAGCCGGACACCgaggacgacGCCgGUACCGACgacagCGAUc -3'
miRNA:   3'- -UCGGCUUGUGG---------CGG-CAUGGCUG-----GCUA- -5'
19011 5' -58.3 NC_004684.1 + 54272 0.73 0.259105
Target:  5'- cAGCC-AGCGCCGCCac-CCGGCCGGg -3'
miRNA:   3'- -UCGGcUUGUGGCGGcauGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 53686 0.72 0.278964
Target:  5'- gGGCCgGAACACCugGuuG-GCCGACCGGUa -3'
miRNA:   3'- -UCGG-CUUGUGG--CggCaUGGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 31286 0.72 0.285848
Target:  5'- cGUCGGcgGCuACCGCCGUACCucgguGACCGGg -3'
miRNA:   3'- uCGGCU--UG-UGGCGGCAUGG-----CUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 50628 0.71 0.342544
Target:  5'- uGGCCGAcacagaaccagucgACACCGCCGUcggggguGCgGACCa-- -3'
miRNA:   3'- -UCGGCU--------------UGUGGCGGCA-------UGgCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 17149 0.71 0.345743
Target:  5'- cGGuuGGGCACCGUCGUcGCCG-UCGAg -3'
miRNA:   3'- -UCggCUUGUGGCGGCA-UGGCuGGCUa -5'
19011 5' -58.3 NC_004684.1 + 46898 0.71 0.345743
Target:  5'- cAGCCGAGCccCCGCCGcaucccccaggACCGGCCa-- -3'
miRNA:   3'- -UCGGCUUGu-GGCGGCa----------UGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 28899 0.73 0.246517
Target:  5'- cGCCGuGGCgACCGCCGcugAUCGACCGGa -3'
miRNA:   3'- uCGGC-UUG-UGGCGGCa--UGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 26323 0.73 0.234441
Target:  5'- cGCCGG--GCCGCCGauUGCCGACgCGGUg -3'
miRNA:   3'- uCGGCUugUGGCGGC--AUGGCUG-GCUA- -5'
19011 5' -58.3 NC_004684.1 + 35444 0.74 0.228591
Target:  5'- cGCCGGACAgCGggcgaCCGUugCGGCCGGg -3'
miRNA:   3'- uCGGCUUGUgGC-----GGCAugGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 57915 0.78 0.124625
Target:  5'- uGGCCGGGCugACCGCCGaugacauUGCCGACCGc- -3'
miRNA:   3'- -UCGGCUUG--UGGCGGC-------AUGGCUGGCua -5'
19011 5' -58.3 NC_004684.1 + 10013 0.78 0.124962
Target:  5'- uGCCGGAC-CUGCCGcgcGCCGACCGGg -3'
miRNA:   3'- uCGGCUUGuGGCGGCa--UGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 57558 0.78 0.124962
Target:  5'- cGCCGAGCugCGCCG-GuuGGCCGAc -3'
miRNA:   3'- uCGGCUUGugGCGGCaUggCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 37624 0.76 0.150772
Target:  5'- uGCCGAACGCCGUCGgugcGCUGGCCa-- -3'
miRNA:   3'- uCGGCUUGUGGCGGCa---UGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 3825 0.76 0.154832
Target:  5'- uGCUGGGCGCguuCGgCGUGCCGACCGAc -3'
miRNA:   3'- uCGGCUUGUG---GCgGCAUGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 2686 0.75 0.172082
Target:  5'- cGCCGGGCACCGCaucccCGgcCUGGCCGGUg -3'
miRNA:   3'- uCGGCUUGUGGCG-----GCauGGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 12859 0.75 0.186126
Target:  5'- aGGCCGAGgccgcCACCGCCGagGCCGccGCCGGg -3'
miRNA:   3'- -UCGGCUU-----GUGGCGGCa-UGGC--UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 19319 0.75 0.191027
Target:  5'- aGGCCGcauACGCCGCCGccgugGCCGAgCGGg -3'
miRNA:   3'- -UCGGCu--UGUGGCGGCa----UGGCUgGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.