miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 5' -58.3 NC_004684.1 + 49383 0.66 0.614472
Target:  5'- uGCCGAuguUGCCGCCGUACuCGGUCa-- -3'
miRNA:   3'- uCGGCUu--GUGGCGGCAUG-GCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 27942 0.66 0.614472
Target:  5'- cGCCGGagcugGCACCGUgGUACgucGCCGAa -3'
miRNA:   3'- uCGGCU-----UGUGGCGgCAUGgc-UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 30520 0.66 0.593267
Target:  5'- gGGUCGGugaaguuCACCGCCGacggcuCCGACCa-- -3'
miRNA:   3'- -UCGGCUu------GUGGCGGCau----GGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 37183 0.66 0.625101
Target:  5'- cGCCGAGCAUCGaCGcGCgCGGCCa-- -3'
miRNA:   3'- uCGGCUUGUGGCgGCaUG-GCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 7705 0.66 0.614472
Target:  5'- aGGCCGu-CGCCGUgGcGCUGGCCGu- -3'
miRNA:   3'- -UCGGCuuGUGGCGgCaUGGCUGGCua -5'
19011 5' -58.3 NC_004684.1 + 38473 0.66 0.614472
Target:  5'- cGCCGAcaaggcagGCACCGgCGUcagcaaggccACCGacGCCGAc -3'
miRNA:   3'- uCGGCU--------UGUGGCgGCA----------UGGC--UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 29436 0.66 0.625101
Target:  5'- cGcCCGGAC-CCGCUGgg-CGACCGGUu -3'
miRNA:   3'- uC-GGCUUGuGGCGGCaugGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 9883 0.66 0.589038
Target:  5'- cGCCGcGCaggagcagGCCGCCGacgagugguccggGCUGACCGAg -3'
miRNA:   3'- uCGGCuUG--------UGGCGGCa------------UGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 10367 0.66 0.625101
Target:  5'- uGCgCGAgaucgcgcGCACCGCCGggUACCaGGCCGc- -3'
miRNA:   3'- uCG-GCU--------UGUGGCGGC--AUGG-CUGGCua -5'
19011 5' -58.3 NC_004684.1 + 48433 0.66 0.614472
Target:  5'- -aCCGcucCACCGCCuUGCCGACCu-- -3'
miRNA:   3'- ucGGCuu-GUGGCGGcAUGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 55527 0.66 0.635735
Target:  5'- cGCC-AGCGCCGCCacgaguucGUACCcguuGCCGAa -3'
miRNA:   3'- uCGGcUUGUGGCGG--------CAUGGc---UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 31724 0.66 0.624037
Target:  5'- cGCCGGuggcgacACACCGCC--GCCGACgGc- -3'
miRNA:   3'- uCGGCU-------UGUGGCGGcaUGGCUGgCua -5'
19011 5' -58.3 NC_004684.1 + 7510 0.66 0.603858
Target:  5'- cGCUGGcCGCCGCgcgCGUGacCCGACUGAUc -3'
miRNA:   3'- uCGGCUuGUGGCG---GCAU--GGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 36744 0.66 0.582706
Target:  5'- cGCCGucccggcgcuGACGCCGCCaggGCCGcgcCCGGUg -3'
miRNA:   3'- uCGGC----------UUGUGGCGGca-UGGCu--GGCUA- -5'
19011 5' -58.3 NC_004684.1 + 7242 0.66 0.625101
Target:  5'- cGCCGAGCAaauCCGCUacGCC-ACCGAg -3'
miRNA:   3'- uCGGCUUGU---GGCGGcaUGGcUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 41347 0.66 0.625101
Target:  5'- cGGCCGGGCcaagGCCacCCGguucAUCGACCGAUu -3'
miRNA:   3'- -UCGGCUUG----UGGc-GGCa---UGGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 58417 0.66 0.592209
Target:  5'- cGCCGGAacccCGCCGguugccuccggccCCGUGCCGGacCCGAc -3'
miRNA:   3'- uCGGCUU----GUGGC-------------GGCAUGGCU--GGCUa -5'
19011 5' -58.3 NC_004684.1 + 34227 0.66 0.625101
Target:  5'- uGUgGGACACCGCCGgGCCaACgGGc -3'
miRNA:   3'- uCGgCUUGUGGCGGCaUGGcUGgCUa -5'
19011 5' -58.3 NC_004684.1 + 63937 0.66 0.593267
Target:  5'- cGCCGAACugGgUGCCGUACCacauGGCCa-- -3'
miRNA:   3'- uCGGCUUG--UgGCGGCAUGG----CUGGcua -5'
19011 5' -58.3 NC_004684.1 + 62185 0.66 0.625101
Target:  5'- cGGCCGAugauggcgaacACGuuGCCGUcCUGGCCa-- -3'
miRNA:   3'- -UCGGCU-----------UGUggCGGCAuGGCUGGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.