miRNA display CGI


Results 1 - 20 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 5' -58.3 NC_004684.1 + 66771 0.73 0.262982
Target:  5'- cGCCGGgugggaagaccuggGCACCGCCGgugACCGggccgccGCCGAg -3'
miRNA:   3'- uCGGCU--------------UGUGGCGGCa--UGGC-------UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 66691 0.67 0.572183
Target:  5'- aGGCCGucCACCGgCGgcugACCucggGGCCGAg -3'
miRNA:   3'- -UCGGCuuGUGGCgGCa---UGG----CUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 66624 0.71 0.329963
Target:  5'- cGCC---UACCGCCGUGCCcGCCGGg -3'
miRNA:   3'- uCGGcuuGUGGCGGCAUGGcUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 66155 0.71 0.337786
Target:  5'- gGGCCGGGCgaccgaccagGCCGCCGagGCCGA-CGAa -3'
miRNA:   3'- -UCGGCUUG----------UGGCGGCa-UGGCUgGCUa -5'
19011 5' -58.3 NC_004684.1 + 65695 0.76 0.167615
Target:  5'- cGCCaaccaGGACGCCGCCGUGCggcucaUGACCGAg -3'
miRNA:   3'- uCGG-----CUUGUGGCGGCAUG------GCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 65260 0.66 0.625101
Target:  5'- cGCCGAACGCaCGCagGUccagcuCCGACCa-- -3'
miRNA:   3'- uCGGCUUGUG-GCGg-CAu-----GGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 64939 0.66 0.582706
Target:  5'- cGCCGAGCugGCCGCCcaGgCGGgCGAUg -3'
miRNA:   3'- uCGGCUUG--UGGCGGcaUgGCUgGCUA- -5'
19011 5' -58.3 NC_004684.1 + 64656 0.68 0.500184
Target:  5'- cGCCGAACGugUgGCCGUGCgGugUGGc -3'
miRNA:   3'- uCGGCUUGU--GgCGGCAUGgCugGCUa -5'
19011 5' -58.3 NC_004684.1 + 64462 0.71 0.31472
Target:  5'- uGCCGGACcacauggaGCUGaCCGcGCCGACCGGg -3'
miRNA:   3'- uCGGCUUG--------UGGC-GGCaUGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 63937 0.66 0.593267
Target:  5'- cGCCGAACugGgUGCCGUACCacauGGCCa-- -3'
miRNA:   3'- uCGGCUUG--UgGCGGCAUGG----CUGGcua -5'
19011 5' -58.3 NC_004684.1 + 63387 0.68 0.490209
Target:  5'- cAGCCGAugGCggcguaGCgGUAcucCCGACCGGa -3'
miRNA:   3'- -UCGGCUugUGg-----CGgCAU---GGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 62575 0.68 0.500184
Target:  5'- cGGCCGGaaucgACACCuuGCCGUugCGgucggccaccgcGCCGAg -3'
miRNA:   3'- -UCGGCU-----UGUGG--CGGCAugGC------------UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 62185 0.66 0.625101
Target:  5'- cGGCCGAugauggcgaacACGuuGCCGUcCUGGCCa-- -3'
miRNA:   3'- -UCGGCU-----------UGUggCGGCAuGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 61484 0.66 0.61341
Target:  5'- cAGCCGGucgugcgcgaucaGCGCCGCCGccACCcggucaGGCUGGUg -3'
miRNA:   3'- -UCGGCU-------------UGUGGCGGCa-UGG------CUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 61293 0.68 0.467629
Target:  5'- cGCCGGgucgauuuccggcaGCACCGCCGccggGCCG-CCGc- -3'
miRNA:   3'- uCGGCU--------------UGUGGCGGCa---UGGCuGGCua -5'
19011 5' -58.3 NC_004684.1 + 61160 0.67 0.530622
Target:  5'- cGUCGAAgGCCugGCCGcccaGCUGGCCGAg -3'
miRNA:   3'- uCGGCUUgUGG--CGGCa---UGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 60586 0.67 0.561707
Target:  5'- aGGCCG-ACGgCGUCGUAgUGGCCGu- -3'
miRNA:   3'- -UCGGCuUGUgGCGGCAUgGCUGGCua -5'
19011 5' -58.3 NC_004684.1 + 59816 0.66 0.582706
Target:  5'- uGCCGcGCACCaGCCGcACCagcgccacccggGGCCGGUc -3'
miRNA:   3'- uCGGCuUGUGG-CGGCaUGG------------CUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 59562 0.72 0.3073
Target:  5'- uGGCCGcgcagguggugGACAUCGCC--GCCGACCGGc -3'
miRNA:   3'- -UCGGC-----------UUGUGGCGGcaUGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 58957 0.68 0.470544
Target:  5'- cGCCGGGCccuguCCGCCGagcUGCCGcGCUGGUu -3'
miRNA:   3'- uCGGCUUGu----GGCGGC---AUGGC-UGGCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.