miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 5' -58.3 NC_004684.1 + 6208 0.69 0.408711
Target:  5'- cGCCGAGgcCACCaaccccgccgaccugGCCGggugGCUGACCGAg -3'
miRNA:   3'- uCGGCUU--GUGG---------------CGGCa---UGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 6541 0.7 0.370413
Target:  5'- cGGCCGAcauCGCCGCCGUggacAUCGACgGu- -3'
miRNA:   3'- -UCGGCUu--GUGGCGGCA----UGGCUGgCua -5'
19011 5' -58.3 NC_004684.1 + 7242 0.66 0.625101
Target:  5'- cGCCGAGCAaauCCGCUacGCC-ACCGAg -3'
miRNA:   3'- uCGGCUUGU---GGCGGcaUGGcUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 7469 0.7 0.396259
Target:  5'- gGGCCGGACACCGaCGcugACaagGGCCGGUu -3'
miRNA:   3'- -UCGGCUUGUGGCgGCa--UGg--CUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 7510 0.66 0.603858
Target:  5'- cGCUGGcCGCCGCgcgCGUGacCCGACUGAUc -3'
miRNA:   3'- uCGGCUuGUGGCG---GCAU--GGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 7705 0.66 0.614472
Target:  5'- aGGCCGu-CGCCGUgGcGCUGGCCGu- -3'
miRNA:   3'- -UCGGCuuGUGGCGgCaUGGCUGGCua -5'
19011 5' -58.3 NC_004684.1 + 8637 0.72 0.3073
Target:  5'- cGGCaCGAACACCacGCCGuUGCCGAUCa-- -3'
miRNA:   3'- -UCG-GCUUGUGG--CGGC-AUGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 8996 0.7 0.378899
Target:  5'- cGGCCGGGCcaaggccuccACgCGCgGUGCCGugCGGg -3'
miRNA:   3'- -UCGGCUUG----------UG-GCGgCAUGGCugGCUa -5'
19011 5' -58.3 NC_004684.1 + 9372 0.73 0.259105
Target:  5'- gAGCCGGACACCgaggacgacGCCgGUACCGACgacagCGAUc -3'
miRNA:   3'- -UCGGCUUGUGG---------CGG-CAUGGCUG-----GCUA- -5'
19011 5' -58.3 NC_004684.1 + 9558 0.71 0.353834
Target:  5'- gAGCCGGuGCGCCGCgaacaCGUgGCCGACCuGAUc -3'
miRNA:   3'- -UCGGCU-UGUGGCG-----GCA-UGGCUGG-CUA- -5'
19011 5' -58.3 NC_004684.1 + 9843 0.69 0.423238
Target:  5'- cGUCGAuCACCGCCGccggugagcUGCCG-CCGGa -3'
miRNA:   3'- uCGGCUuGUGGCGGC---------AUGGCuGGCUa -5'
19011 5' -58.3 NC_004684.1 + 9883 0.66 0.589038
Target:  5'- cGCCGcGCaggagcagGCCGCCGacgagugguccggGCUGACCGAg -3'
miRNA:   3'- uCGGCuUG--------UGGCGGCa------------UGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 9960 0.67 0.551283
Target:  5'- cGcCCGAuccuaACGCCGCCGgcacACCGGUCGAg -3'
miRNA:   3'- uC-GGCU-----UGUGGCGGCa---UGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 10013 0.78 0.124962
Target:  5'- uGCCGGAC-CUGCCGcgcGCCGACCGGg -3'
miRNA:   3'- uCGGCUUGuGGCGGCa--UGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 10127 0.68 0.490209
Target:  5'- aGGCCGAGCugUGCgG-GCCGACgGu- -3'
miRNA:   3'- -UCGGCUUGugGCGgCaUGGCUGgCua -5'
19011 5' -58.3 NC_004684.1 + 10367 0.66 0.625101
Target:  5'- uGCgCGAgaucgcgcGCACCGCCGggUACCaGGCCGc- -3'
miRNA:   3'- uCG-GCU--------UGUGGCGGC--AUGG-CUGGCua -5'
19011 5' -58.3 NC_004684.1 + 10618 0.68 0.510248
Target:  5'- uGCCGuu-GCCGUaugggCGUGCUGGCCGAg -3'
miRNA:   3'- uCGGCuugUGGCG-----GCAUGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 10888 0.73 0.259105
Target:  5'- cGCCGGAUGCCGCUacgGUGCCGACg--- -3'
miRNA:   3'- uCGGCUUGUGGCGG---CAUGGCUGgcua -5'
19011 5' -58.3 NC_004684.1 + 10890 0.66 0.625101
Target:  5'- cGCCGGugACCacccgggucgGCgCGUACaGGCCGAg -3'
miRNA:   3'- uCGGCUugUGG----------CG-GCAUGgCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 11816 0.67 0.520396
Target:  5'- gGGCgCGAgcGCGCCGCUGUccGgCGACUGGc -3'
miRNA:   3'- -UCG-GCU--UGUGGCGGCA--UgGCUGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.