miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19012 5' -57.9 NC_004684.1 + 2853 0.69 0.497734
Target:  5'- -uGGaCCACGGGuucCUGGUCGCGCcggacgaccugcugGUGCg -3'
miRNA:   3'- guCCaGGUGCUU---GGCCAGCGCG--------------CACG- -5'
19012 5' -57.9 NC_004684.1 + 27373 0.68 0.52078
Target:  5'- aAGG-CCACcaucgcGCCGGa-GCGCGUGCu -3'
miRNA:   3'- gUCCaGGUGcu----UGGCCagCGCGCACG- -5'
19012 5' -57.9 NC_004684.1 + 65766 0.68 0.52078
Target:  5'- -uGGccgCCGCGcGCCGGUgggCGCGCGcacgGCg -3'
miRNA:   3'- guCCa--GGUGCuUGGCCA---GCGCGCa---CG- -5'
19012 5' -57.9 NC_004684.1 + 59650 0.68 0.53093
Target:  5'- uCAGGUCCcccauGCGcGCCaGUCGCGCa--- -3'
miRNA:   3'- -GUCCAGG-----UGCuUGGcCAGCGCGcacg -5'
19012 5' -57.9 NC_004684.1 + 26679 0.68 0.541151
Target:  5'- uCGGGgCCAuCGucaaccuGCUGGU-GCGCGUGCu -3'
miRNA:   3'- -GUCCaGGU-GCu------UGGCCAgCGCGCACG- -5'
19012 5' -57.9 NC_004684.1 + 36984 0.73 0.294538
Target:  5'- aCAGGUguugCCACGGcagcGCCGGgauGCGCGUGg -3'
miRNA:   3'- -GUCCA----GGUGCU----UGGCCag-CGCGCACg -5'
19012 5' -57.9 NC_004684.1 + 51690 0.73 0.294538
Target:  5'- cCGGGagCACGAuGCCGGUgGCGUcgGUGCc -3'
miRNA:   3'- -GUCCagGUGCU-UGGCCAgCGCG--CACG- -5'
19012 5' -57.9 NC_004684.1 + 57282 0.72 0.316316
Target:  5'- cCAGGUCCACGcGCUuGUCGCcgGUGUGg -3'
miRNA:   3'- -GUCCAGGUGCuUGGcCAGCG--CGCACg -5'
19012 5' -57.9 NC_004684.1 + 42317 0.72 0.331498
Target:  5'- gAGGUcggCCACGuuGCCGGUgCGCGCGaacuucuggagcUGCg -3'
miRNA:   3'- gUCCA---GGUGCu-UGGCCA-GCGCGC------------ACG- -5'
19012 5' -57.9 NC_004684.1 + 38047 0.72 0.347208
Target:  5'- aCAGGUCCACc-GCCucccagcgcuuGGUCaGCGgCGUGCg -3'
miRNA:   3'- -GUCCAGGUGcuUGG-----------CCAG-CGC-GCACG- -5'
19012 5' -57.9 NC_004684.1 + 5227 0.71 0.355261
Target:  5'- cCGGGUCaCGCGAgcccugcgcaagGCCGGgcacggCGagGCGUGCa -3'
miRNA:   3'- -GUCCAG-GUGCU------------UGGCCa-----GCg-CGCACG- -5'
19012 5' -57.9 NC_004684.1 + 34647 0.73 0.280678
Target:  5'- cCAGGUcggCCGCGAcguACCGGUCGauguagGcCGUGCg -3'
miRNA:   3'- -GUCCA---GGUGCU---UGGCCAGCg-----C-GCACG- -5'
19012 5' -57.9 NC_004684.1 + 55405 0.74 0.248304
Target:  5'- gGGGUCaugccguCGGugccGCCGGUCGCGgUGUGCg -3'
miRNA:   3'- gUCCAGgu-----GCU----UGGCCAGCGC-GCACG- -5'
19012 5' -57.9 NC_004684.1 + 21611 0.74 0.248304
Target:  5'- aCAGGUCUACG-ACCGGUacCGCaccgGCGUGa -3'
miRNA:   3'- -GUCCAGGUGCuUGGCCA--GCG----CGCACg -5'
19012 5' -57.9 NC_004684.1 + 37939 0.74 0.236245
Target:  5'- cCAGGUCgAuguCGAACCGGUCGCccaGCGgguccggGCg -3'
miRNA:   3'- -GUCCAGgU---GCUUGGCCAGCG---CGCa------CG- -5'
19012 5' -57.9 NC_004684.1 + 47485 0.75 0.218527
Target:  5'- cCAGGUCCAgGAGCuUGGUgGCGUcgaacacGUGCg -3'
miRNA:   3'- -GUCCAGGUgCUUG-GCCAgCGCG-------CACG- -5'
19012 5' -57.9 NC_004684.1 + 1599 0.75 0.197862
Target:  5'- -cGGUgCACGGcAUCGGUCGC-CGUGCg -3'
miRNA:   3'- guCCAgGUGCU-UGGCCAGCGcGCACG- -5'
19012 5' -57.9 NC_004684.1 + 58330 0.76 0.192845
Target:  5'- cCGGGUCCACcguGAGCUGGcUgGCGuCGUGCc -3'
miRNA:   3'- -GUCCAGGUG---CUUGGCC-AgCGC-GCACG- -5'
19012 5' -57.9 NC_004684.1 + 29370 0.83 0.062194
Target:  5'- gGGcGUCCAgGAACUGGUCGCGCuuGUGCu -3'
miRNA:   3'- gUC-CAGGUgCUUGGCCAGCGCG--CACG- -5'
19012 5' -57.9 NC_004684.1 + 1462 0.66 0.677342
Target:  5'- -uGGUCgAgacCGGGCCGGaCGUGCccgGUGCg -3'
miRNA:   3'- guCCAGgU---GCUUGGCCaGCGCG---CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.