miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19012 5' -57.9 NC_004684.1 + 59373 0.66 0.656335
Target:  5'- aCGGuGUCCugGAACCGcccggcggcacaGUCGCuGCacuUGCa -3'
miRNA:   3'- -GUC-CAGGugCUUGGC------------CAGCG-CGc--ACG- -5'
19012 5' -57.9 NC_004684.1 + 14493 0.67 0.582622
Target:  5'- -cGGUaCCAC--GCCGGUCGC-CGgugGCa -3'
miRNA:   3'- guCCA-GGUGcuUGGCCAGCGcGCa--CG- -5'
19012 5' -57.9 NC_004684.1 + 49691 0.67 0.582622
Target:  5'- aCGGuGUCCAgGGcACCGGgcaCGCGCucgGCg -3'
miRNA:   3'- -GUC-CAGGUgCU-UGGCCa--GCGCGca-CG- -5'
19012 5' -57.9 NC_004684.1 + 17400 0.67 0.603612
Target:  5'- -cGGUgCauuugACGAugCGG-CGCGCGUGa -3'
miRNA:   3'- guCCAgG-----UGCUugGCCaGCGCGCACg -5'
19012 5' -57.9 NC_004684.1 + 13083 0.67 0.603612
Target:  5'- -cGGUgCGCc--CCGGuUCGCGCgGUGCa -3'
miRNA:   3'- guCCAgGUGcuuGGCC-AGCGCG-CACG- -5'
19012 5' -57.9 NC_004684.1 + 48121 0.67 0.607823
Target:  5'- uCGGGUCCAcCGucCCGGUCgGCccggugaugaugggaGCGUuGCg -3'
miRNA:   3'- -GUCCAGGU-GCuuGGCCAG-CG---------------CGCA-CG- -5'
19012 5' -57.9 NC_004684.1 + 1138 0.67 0.614145
Target:  5'- -cGG-CCACGGcauGCCGGgCGUGCcgaccGUGCa -3'
miRNA:   3'- guCCaGGUGCU---UGGCCaGCGCG-----CACG- -5'
19012 5' -57.9 NC_004684.1 + 45605 0.66 0.631024
Target:  5'- aCAGGUCCAgcaccagcgcguCGGucuuGCCGGggaacaggcgcagCGCGCG-GCc -3'
miRNA:   3'- -GUCCAGGU------------GCU----UGGCCa------------GCGCGCaCG- -5'
19012 5' -57.9 NC_004684.1 + 32211 0.66 0.642631
Target:  5'- gCAcGUCCGgGAGCCGGUUcgguaucgacagcgGCGCGaucuacUGCg -3'
miRNA:   3'- -GUcCAGGUgCUUGGCCAG--------------CGCGC------ACG- -5'
19012 5' -57.9 NC_004684.1 + 19563 0.68 0.551438
Target:  5'- cCAGGUCUcCGGGCCuGG-CGU-CGUGCa -3'
miRNA:   3'- -GUCCAGGuGCUUGG-CCaGCGcGCACG- -5'
19012 5' -57.9 NC_004684.1 + 26679 0.68 0.541151
Target:  5'- uCGGGgCCAuCGucaaccuGCUGGU-GCGCGUGCu -3'
miRNA:   3'- -GUCCaGGU-GCu------UGGCCAgCGCGCACG- -5'
19012 5' -57.9 NC_004684.1 + 59650 0.68 0.53093
Target:  5'- uCAGGUCCcccauGCGcGCCaGUCGCGCa--- -3'
miRNA:   3'- -GUCCAGG-----UGCuUGGcCAGCGCGcacg -5'
19012 5' -57.9 NC_004684.1 + 51808 0.74 0.230401
Target:  5'- -cGGUCCACG-GCCaGGcCGCGCGcGCu -3'
miRNA:   3'- guCCAGGUGCuUGG-CCaGCGCGCaCG- -5'
19012 5' -57.9 NC_004684.1 + 47554 0.74 0.260868
Target:  5'- gCAGGgCCACGAugUuGUCGCGCuUGCu -3'
miRNA:   3'- -GUCCaGGUGCUugGcCAGCGCGcACG- -5'
19012 5' -57.9 NC_004684.1 + 10230 0.73 0.273945
Target:  5'- cCAGGUgCGCGAgcaGCUGGccgUGCGCGUGg -3'
miRNA:   3'- -GUCCAgGUGCU---UGGCCa--GCGCGCACg -5'
19012 5' -57.9 NC_004684.1 + 55094 0.71 0.371758
Target:  5'- aCAGG-CCAagGAGCCGGUgccguaCGUGCaGUGCa -3'
miRNA:   3'- -GUCCaGGUg-CUUGGCCA------GCGCG-CACG- -5'
19012 5' -57.9 NC_004684.1 + 64869 0.7 0.397463
Target:  5'- gGGGUgCGCGuuguCCGGUCGCGCc--- -3'
miRNA:   3'- gUCCAgGUGCuu--GGCCAGCGCGcacg -5'
19012 5' -57.9 NC_004684.1 + 2853 0.69 0.497734
Target:  5'- -uGGaCCACGGGuucCUGGUCGCGCcggacgaccugcugGUGCg -3'
miRNA:   3'- guCCaGGUGCUU---GGCCAGCGCG--------------CACG- -5'
19012 5' -57.9 NC_004684.1 + 27373 0.68 0.52078
Target:  5'- aAGG-CCACcaucgcGCCGGa-GCGCGUGCu -3'
miRNA:   3'- gUCCaGGUGcu----UGGCCagCGCGCACG- -5'
19012 5' -57.9 NC_004684.1 + 65766 0.68 0.52078
Target:  5'- -uGGccgCCGCGcGCCGGUgggCGCGCGcacgGCg -3'
miRNA:   3'- guCCa--GGUGCuUGGCCA---GCGCGCa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.