miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19012 5' -57.9 NC_004684.1 + 793 0.67 0.624692
Target:  5'- -uGG-CCAaGAACCaGGUCGUGCGcgacgGCa -3'
miRNA:   3'- guCCaGGUgCUUGG-CCAGCGCGCa----CG- -5'
19012 5' -57.9 NC_004684.1 + 1138 0.67 0.614145
Target:  5'- -cGG-CCACGGcauGCCGGgCGUGCcgaccGUGCa -3'
miRNA:   3'- guCCaGGUGCU---UGGCCaGCGCG-----CACG- -5'
19012 5' -57.9 NC_004684.1 + 1462 0.66 0.677342
Target:  5'- -uGGUCgAgacCGGGCCGGaCGUGCccgGUGCg -3'
miRNA:   3'- guCCAGgU---GCUUGGCCaGCGCG---CACG- -5'
19012 5' -57.9 NC_004684.1 + 1599 0.75 0.197862
Target:  5'- -cGGUgCACGGcAUCGGUCGC-CGUGCg -3'
miRNA:   3'- guCCAgGUGCU-UGGCCAGCGcGCACG- -5'
19012 5' -57.9 NC_004684.1 + 1752 0.7 0.442752
Target:  5'- gUAGGUCg--GGACCGGagcugCGCGCGUGg -3'
miRNA:   3'- -GUCCAGgugCUUGGCCa----GCGCGCACg -5'
19012 5' -57.9 NC_004684.1 + 2020 0.67 0.624692
Target:  5'- gGGGUCCGCGAugACCG-UCGCccugGUG-GCc -3'
miRNA:   3'- gUCCAGGUGCU--UGGCcAGCG----CGCaCG- -5'
19012 5' -57.9 NC_004684.1 + 2853 0.69 0.497734
Target:  5'- -uGGaCCACGGGuucCUGGUCGCGCcggacgaccugcugGUGCg -3'
miRNA:   3'- guCCaGGUGCUU---GGCCAGCGCG--------------CACG- -5'
19012 5' -57.9 NC_004684.1 + 4131 0.66 0.666853
Target:  5'- cCAGGUCCAgGAGCgcauCGG-CGCGgacacCGUGg -3'
miRNA:   3'- -GUCCAGGUgCUUG----GCCaGCGC-----GCACg -5'
19012 5' -57.9 NC_004684.1 + 5040 0.7 0.424283
Target:  5'- gAGGUgCGCaGGCUGGcgCGCGCuGUGCu -3'
miRNA:   3'- gUCCAgGUGcUUGGCCa-GCGCG-CACG- -5'
19012 5' -57.9 NC_004684.1 + 5227 0.71 0.355261
Target:  5'- cCGGGUCaCGCGAgcccugcgcaagGCCGGgcacggCGagGCGUGCa -3'
miRNA:   3'- -GUCCAG-GUGCU------------UGGCCa-----GCg-CGCACG- -5'
19012 5' -57.9 NC_004684.1 + 7215 0.67 0.614145
Target:  5'- cCAGG-CCGCGu-CUGGgaGCGCGUGg -3'
miRNA:   3'- -GUCCaGGUGCuuGGCCagCGCGCACg -5'
19012 5' -57.9 NC_004684.1 + 7502 0.66 0.677342
Target:  5'- --uGUCUACGcGCUGGccgccgCGCGCGUGa -3'
miRNA:   3'- gucCAGGUGCuUGGCCa-----GCGCGCACg -5'
19012 5' -57.9 NC_004684.1 + 10230 0.73 0.273945
Target:  5'- cCAGGUgCGCGAgcaGCUGGccgUGCGCGUGg -3'
miRNA:   3'- -GUCCAgGUGCU---UGGCCa--GCGCGCACg -5'
19012 5' -57.9 NC_004684.1 + 12523 0.7 0.394842
Target:  5'- gCAGGgCCACGAccguggcagcaaacGCCuGGUUGCugccaGCGUGCu -3'
miRNA:   3'- -GUCCaGGUGCU--------------UGG-CCAGCG-----CGCACG- -5'
19012 5' -57.9 NC_004684.1 + 13083 0.67 0.603612
Target:  5'- -cGGUgCGCc--CCGGuUCGCGCgGUGCa -3'
miRNA:   3'- guCCAgGUGcuuGGCC-AGCGCG-CACG- -5'
19012 5' -57.9 NC_004684.1 + 13755 0.67 0.623637
Target:  5'- aCGGGgugcUCCagcgcauGCGGguguCCGGgcCGCGCGUGCu -3'
miRNA:   3'- -GUCC----AGG-------UGCUu---GGCCa-GCGCGCACG- -5'
19012 5' -57.9 NC_004684.1 + 14493 0.67 0.582622
Target:  5'- -cGGUaCCAC--GCCGGUCGC-CGgugGCa -3'
miRNA:   3'- guCCA-GGUGcuUGGCCAGCGcGCa--CG- -5'
19012 5' -57.9 NC_004684.1 + 16130 0.67 0.624692
Target:  5'- ---cUgUACGAGCCGaucaugCGCGCGUGCg -3'
miRNA:   3'- guccAgGUGCUUGGCca----GCGCGCACG- -5'
19012 5' -57.9 NC_004684.1 + 17400 0.67 0.603612
Target:  5'- -cGGUgCauuugACGAugCGG-CGCGCGUGa -3'
miRNA:   3'- guCCAgG-----UGCUugGCCaGCGCGCACg -5'
19012 5' -57.9 NC_004684.1 + 19099 0.67 0.582622
Target:  5'- -uGGUgCGCGAagGCCGGUgG-GaCGUGCg -3'
miRNA:   3'- guCCAgGUGCU--UGGCCAgCgC-GCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.