Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19012 | 5' | -57.9 | NC_004684.1 | + | 44654 | 1.1 | 0.000731 |
Target: 5'- gCAGGUCCACGAACCGGUCGCGCGUGCc -3' miRNA: 3'- -GUCCAGGUGCUUGGCCAGCGCGCACG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 29370 | 0.83 | 0.062194 |
Target: 5'- gGGcGUCCAgGAACUGGUCGCGCuuGUGCu -3' miRNA: 3'- gUC-CAGGUgCUUGGCCAGCGCG--CACG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 58330 | 0.76 | 0.192845 |
Target: 5'- cCGGGUCCACcguGAGCUGGcUgGCGuCGUGCc -3' miRNA: 3'- -GUCCAGGUG---CUUGGCC-AgCGC-GCACG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 1599 | 0.75 | 0.197862 |
Target: 5'- -cGGUgCACGGcAUCGGUCGC-CGUGCg -3' miRNA: 3'- guCCAgGUGCU-UGGCCAGCGcGCACG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 50055 | 0.75 | 0.208238 |
Target: 5'- cCAGG-CCAgGAACCGGUCGaGC-UGCg -3' miRNA: 3'- -GUCCaGGUgCUUGGCCAGCgCGcACG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 47485 | 0.75 | 0.218527 |
Target: 5'- cCAGGUCCAgGAGCuUGGUgGCGUcgaacacGUGCg -3' miRNA: 3'- -GUCCAGGUgCUUG-GCCAgCGCG-------CACG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 51808 | 0.74 | 0.230401 |
Target: 5'- -cGGUCCACG-GCCaGGcCGCGCGcGCu -3' miRNA: 3'- guCCAGGUGCuUGG-CCaGCGCGCaCG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 37939 | 0.74 | 0.236245 |
Target: 5'- cCAGGUCgAuguCGAACCGGUCGCccaGCGgguccggGCg -3' miRNA: 3'- -GUCCAGgU---GCUUGGCCAGCG---CGCa------CG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 21611 | 0.74 | 0.248304 |
Target: 5'- aCAGGUCUACG-ACCGGUacCGCaccgGCGUGa -3' miRNA: 3'- -GUCCAGGUGCuUGGCCA--GCG----CGCACg -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 55405 | 0.74 | 0.248304 |
Target: 5'- gGGGUCaugccguCGGugccGCCGGUCGCGgUGUGCg -3' miRNA: 3'- gUCCAGgu-----GCU----UGGCCAGCGC-GCACG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 47554 | 0.74 | 0.260868 |
Target: 5'- gCAGGgCCACGAugUuGUCGCGCuUGCu -3' miRNA: 3'- -GUCCaGGUGCUugGcCAGCGCGcACG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 10230 | 0.73 | 0.273945 |
Target: 5'- cCAGGUgCGCGAgcaGCUGGccgUGCGCGUGg -3' miRNA: 3'- -GUCCAgGUGCU---UGGCCa--GCGCGCACg -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 34647 | 0.73 | 0.280678 |
Target: 5'- cCAGGUcggCCGCGAcguACCGGUCGauguagGcCGUGCg -3' miRNA: 3'- -GUCCA---GGUGCU---UGGCCAGCg-----C-GCACG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 51690 | 0.73 | 0.294538 |
Target: 5'- cCGGGagCACGAuGCCGGUgGCGUcgGUGCc -3' miRNA: 3'- -GUCCagGUGCU-UGGCCAgCGCG--CACG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 36984 | 0.73 | 0.294538 |
Target: 5'- aCAGGUguugCCACGGcagcGCCGGgauGCGCGUGg -3' miRNA: 3'- -GUCCA----GGUGCU----UGGCCag-CGCGCACg -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 57282 | 0.72 | 0.316316 |
Target: 5'- cCAGGUCCACGcGCUuGUCGCcgGUGUGg -3' miRNA: 3'- -GUCCAGGUGCuUGGcCAGCG--CGCACg -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 42317 | 0.72 | 0.331498 |
Target: 5'- gAGGUcggCCACGuuGCCGGUgCGCGCGaacuucuggagcUGCg -3' miRNA: 3'- gUCCA---GGUGCu-UGGCCA-GCGCGC------------ACG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 38047 | 0.72 | 0.347208 |
Target: 5'- aCAGGUCCACc-GCCucccagcgcuuGGUCaGCGgCGUGCg -3' miRNA: 3'- -GUCCAGGUGcuUGG-----------CCAG-CGC-GCACG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 5227 | 0.71 | 0.355261 |
Target: 5'- cCGGGUCaCGCGAgcccugcgcaagGCCGGgcacggCGagGCGUGCa -3' miRNA: 3'- -GUCCAG-GUGCU------------UGGCCa-----GCg-CGCACG- -5' |
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19012 | 5' | -57.9 | NC_004684.1 | + | 55094 | 0.71 | 0.371758 |
Target: 5'- aCAGG-CCAagGAGCCGGUgccguaCGUGCaGUGCa -3' miRNA: 3'- -GUCCaGGUg-CUUGGCCA------GCGCG-CACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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