miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19014 3' -59.2 NC_004684.1 + 16910 0.67 0.465565
Target:  5'- cACACCGCCGaaca--GCAUCGCUGAGa -3'
miRNA:   3'- -UGUGGCGGCaucuacCGUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 3809 0.67 0.459744
Target:  5'- cCACCGCCGcgccgcgcaggccgaUGGAccugaUGGCAgCgGCCGAGg -3'
miRNA:   3'- uGUGGCGGC---------------AUCU-----ACCGU-GgCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 60432 0.67 0.455885
Target:  5'- gGCGuuGCCGUugccGGUGGCGaacuucuucaCGCCGGAc -3'
miRNA:   3'- -UGUggCGGCAu---CUACCGUg---------GCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 51623 0.67 0.455885
Target:  5'- uCGCCGCCGc-GAUaGGUGCCGCUGc- -3'
miRNA:   3'- uGUGGCGGCauCUA-CCGUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 33565 0.67 0.455885
Target:  5'- cCGCCGCCGccg--GGCAcaccgcCCGCCGAc -3'
miRNA:   3'- uGUGGCGGCaucuaCCGU------GGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 55740 0.67 0.455885
Target:  5'- -gGCCGCCGUGc-UGGCGUgGCCGAu -3'
miRNA:   3'- ugUGGCGGCAUcuACCGUGgCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 51512 0.67 0.455885
Target:  5'- uCACCGCCGccUGGcgGGaCACCuucuccagguaGCCGAGc -3'
miRNA:   3'- uGUGGCGGC--AUCuaCC-GUGG-----------CGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 12940 0.67 0.455885
Target:  5'- uCGCCGCCGUc---GGCACCcCCGGu -3'
miRNA:   3'- uGUGGCGGCAucuaCCGUGGcGGCUu -5'
19014 3' -59.2 NC_004684.1 + 30723 0.67 0.450128
Target:  5'- uCGCCGCCGUcGAUGGUGguggccucccaguauUCGCUGAc -3'
miRNA:   3'- uGUGGCGGCAuCUACCGU---------------GGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 8631 0.67 0.446313
Target:  5'- gGCACCGCCGauccucGGCAcccCCGCCGu- -3'
miRNA:   3'- -UGUGGCGGCaucua-CCGU---GGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 33074 0.67 0.446313
Target:  5'- uGCGCUGCUcaaucuGUccGGcGUGGCGCUGCCGAc -3'
miRNA:   3'- -UGUGGCGG------CA--UC-UACCGUGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 35990 0.67 0.446313
Target:  5'- cGCACaGUCG-GGGUGGUGcCCGCCGGAc -3'
miRNA:   3'- -UGUGgCGGCaUCUACCGU-GGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 24887 0.67 0.445362
Target:  5'- cGCGCCaUCGUggcuacgAGAUGGcCGCCGCCGc- -3'
miRNA:   3'- -UGUGGcGGCA-------UCUACC-GUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 37196 0.68 0.436855
Target:  5'- -gACuCGCCGgguuuGGUGGCcaccagcucGCCGCCGAc -3'
miRNA:   3'- ugUG-GCGGCau---CUACCG---------UGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 47831 0.68 0.436855
Target:  5'- gACGCCagGCCcggAGAccUGGCACCGCCc-- -3'
miRNA:   3'- -UGUGG--CGGca-UCU--ACCGUGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 26949 0.68 0.436855
Target:  5'- -gGCCGCCug----GGCACCGCUGAc -3'
miRNA:   3'- ugUGGCGGcaucuaCCGUGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 23591 0.68 0.436855
Target:  5'- aACACCGCCGccGGUGGUAucacCCGCgCGc- -3'
miRNA:   3'- -UGUGGCGGCauCUACCGU----GGCG-GCuu -5'
19014 3' -59.2 NC_004684.1 + 61312 0.68 0.427514
Target:  5'- aGCACCGCCGccg--GGcCGCCGCCc-- -3'
miRNA:   3'- -UGUGGCGGCaucuaCC-GUGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 15150 0.68 0.424734
Target:  5'- gUACCGCCGcu-GUGGCACCacggccugaucgacGCCGGGg -3'
miRNA:   3'- uGUGGCGGCaucUACCGUGG--------------CGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 3480 0.68 0.400215
Target:  5'- uACAaCGCCGUuacccgguaccuGGAccaccUGGCACCGCUGGg -3'
miRNA:   3'- -UGUgGCGGCA------------UCU-----ACCGUGGCGGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.