Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19014 | 3' | -59.2 | NC_004684.1 | + | 40992 | 0.66 | 0.515465 |
Target: 5'- cGCGCCGgUGgcGGcguUGGCcagaucGCCGCCGAc -3' miRNA: 3'- -UGUGGCgGCauCU---ACCG------UGGCGGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 50648 | 0.66 | 0.515465 |
Target: 5'- gACACCGCCGUcggGGGUGcggaccaggcguGCGCCcgguGCCGu- -3' miRNA: 3'- -UGUGGCGGCA---UCUAC------------CGUGG----CGGCuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 56038 | 0.66 | 0.505301 |
Target: 5'- cCACCaCCGUGGGccUGGagGCCGCCGu- -3' miRNA: 3'- uGUGGcGGCAUCU--ACCg-UGGCGGCuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 4060 | 0.66 | 0.505301 |
Target: 5'- cCAUCGCCGggugaccGGGUGGUgggACUGUCGAAg -3' miRNA: 3'- uGUGGCGGCa------UCUACCG---UGGCGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 55382 | 0.67 | 0.496227 |
Target: 5'- cCACCGCCGccgcgaaguccugcgGGGUcaugccgucGGUGCCGCCGGu -3' miRNA: 3'- uGUGGCGGCa--------------UCUA---------CCGUGGCGGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 47235 | 0.67 | 0.495224 |
Target: 5'- cGCACCGCCucgggcgcgaggGUAGc-GGCugCGCgGAAc -3' miRNA: 3'- -UGUGGCGG------------CAUCuaCCGugGCGgCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 24490 | 0.67 | 0.495224 |
Target: 5'- cUACCGCCGgGGgcGGUGCCGCaGGg -3' miRNA: 3'- uGUGGCGGCaUCuaCCGUGGCGgCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 62477 | 0.67 | 0.495224 |
Target: 5'- uUACCGgU---GAUGGUGCCGCCGAGg -3' miRNA: 3'- uGUGGCgGcauCUACCGUGGCGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 7503 | 0.67 | 0.485239 |
Target: 5'- uGCGCCGCCGcaucgGGGUggaccugcccGGCACCGaCCu-- -3' miRNA: 3'- -UGUGGCGGCa----UCUA----------CCGUGGC-GGcuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 34232 | 0.67 | 0.485239 |
Target: 5'- gACACCGCCGggccaacGGgcGGCaACUGCCu-- -3' miRNA: 3'- -UGUGGCGGCa------UCuaCCG-UGGCGGcuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 18274 | 0.67 | 0.485239 |
Target: 5'- cACGCCcgGCCGccuGcUGGCACCGaCCGGc -3' miRNA: 3'- -UGUGG--CGGCau-CuACCGUGGC-GGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 47266 | 0.67 | 0.485239 |
Target: 5'- -aACCGCaCGUucuUGGUGCCGCCGc- -3' miRNA: 3'- ugUGGCG-GCAucuACCGUGGCGGCuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 61229 | 0.67 | 0.475351 |
Target: 5'- cUACCGCCGcacGcUGGcCGCCGCCGu- -3' miRNA: 3'- uGUGGCGGCau-CuACC-GUGGCGGCuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 55160 | 0.67 | 0.475351 |
Target: 5'- uCGCCGCCGUcGGgcGGCACguaCCGGAa -3' miRNA: 3'- uGUGGCGGCA-UCuaCCGUGgc-GGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 31653 | 0.67 | 0.475351 |
Target: 5'- --cCCGCCG-GGAcgcUGGCACUGUCGGc -3' miRNA: 3'- uguGGCGGCaUCU---ACCGUGGCGGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 64309 | 0.67 | 0.475351 |
Target: 5'- -gGCCGUCGUGG-UGGUugaacACCGCCa-- -3' miRNA: 3'- ugUGGCGGCAUCuACCG-----UGGCGGcuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 30984 | 0.67 | 0.475351 |
Target: 5'- gGCACCGuuGagacgcuGAUGGCGCagcugggccugaCGCCGAc -3' miRNA: 3'- -UGUGGCggCau-----CUACCGUG------------GCGGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 31720 | 0.67 | 0.475351 |
Target: 5'- uCAUCGCCG---GUGGCgacacaccGCCGCCGAc -3' miRNA: 3'- uGUGGCGGCaucUACCG--------UGGCGGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 55175 | 0.67 | 0.475351 |
Target: 5'- aGCACCcCCGgAGAacGCACCGCUGGc -3' miRNA: 3'- -UGUGGcGGCaUCUacCGUGGCGGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 50122 | 0.67 | 0.465565 |
Target: 5'- aGCGCCGCCGagcaguugcaGGAccaGCGCCGCCGu- -3' miRNA: 3'- -UGUGGCGGCa---------UCUac-CGUGGCGGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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