miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19014 3' -59.2 NC_004684.1 + 8567 0.66 0.546425
Target:  5'- -uGCCGCaCG-AGAUGaGC-CUGCCGAGc -3'
miRNA:   3'- ugUGGCG-GCaUCUAC-CGuGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 6137 0.66 0.515465
Target:  5'- gACACCGCCGcc-AUGGCcCUGCUGu- -3'
miRNA:   3'- -UGUGGCGGCaucUACCGuGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 12612 0.66 0.536033
Target:  5'- cACGCCGCgCaccuuGcgGGCACCGgCGAGg -3'
miRNA:   3'- -UGUGGCG-Gcau--CuaCCGUGGCgGCUU- -5'
19014 3' -59.2 NC_004684.1 + 47057 0.66 0.524683
Target:  5'- uGCACCgggcgacGCCGaucucGAUGGcCGCCGCCGc- -3'
miRNA:   3'- -UGUGG-------CGGCau---CUACC-GUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 60432 0.67 0.455885
Target:  5'- gGCGuuGCCGUugccGGUGGCGaacuucuucaCGCCGGAc -3'
miRNA:   3'- -UGUggCGGCAu---CUACCGUg---------GCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 61229 0.67 0.475351
Target:  5'- cUACCGCCGcacGcUGGcCGCCGCCGu- -3'
miRNA:   3'- uGUGGCGGCau-CuACC-GUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 3809 0.67 0.459744
Target:  5'- cCACCGCCGcgccgcgcaggccgaUGGAccugaUGGCAgCgGCCGAGg -3'
miRNA:   3'- uGUGGCGGC---------------AUCU-----ACCGU-GgCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 51512 0.67 0.455885
Target:  5'- uCACCGCCGccUGGcgGGaCACCuucuccagguaGCCGAGc -3'
miRNA:   3'- uGUGGCGGC--AUCuaCC-GUGG-----------CGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 18274 0.67 0.485239
Target:  5'- cACGCCcgGCCGccuGcUGGCACCGaCCGGc -3'
miRNA:   3'- -UGUGG--CGGCau-CuACCGUGGC-GGCUu -5'
19014 3' -59.2 NC_004684.1 + 34232 0.67 0.485239
Target:  5'- gACACCGCCGggccaacGGgcGGCaACUGCCu-- -3'
miRNA:   3'- -UGUGGCGGCa------UCuaCCG-UGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 55160 0.67 0.475351
Target:  5'- uCGCCGCCGUcGGgcGGCACguaCCGGAa -3'
miRNA:   3'- uGUGGCGGCA-UCuaCCGUGgc-GGCUU- -5'
19014 3' -59.2 NC_004684.1 + 50122 0.67 0.465565
Target:  5'- aGCGCCGCCGagcaguugcaGGAccaGCGCCGCCGu- -3'
miRNA:   3'- -UGUGGCGGCa---------UCUac-CGUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 33565 0.67 0.455885
Target:  5'- cCGCCGCCGccg--GGCAcaccgcCCGCCGAc -3'
miRNA:   3'- uGUGGCGGCaucuaCCGU------GGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 12940 0.67 0.455885
Target:  5'- uCGCCGCCGUc---GGCACCcCCGGu -3'
miRNA:   3'- uGUGGCGGCAucuaCCGUGGcGGCUu -5'
19014 3' -59.2 NC_004684.1 + 16910 0.67 0.465565
Target:  5'- cACACCGCCGaaca--GCAUCGCUGAGa -3'
miRNA:   3'- -UGUGGCGGCaucuacCGUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 30984 0.67 0.475351
Target:  5'- gGCACCGuuGagacgcuGAUGGCGCagcugggccugaCGCCGAc -3'
miRNA:   3'- -UGUGGCggCau-----CUACCGUG------------GCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 31720 0.67 0.475351
Target:  5'- uCAUCGCCG---GUGGCgacacaccGCCGCCGAc -3'
miRNA:   3'- uGUGGCGGCaucUACCG--------UGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 31653 0.67 0.475351
Target:  5'- --cCCGCCG-GGAcgcUGGCACUGUCGGc -3'
miRNA:   3'- uguGGCGGCaUCU---ACCGUGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 55175 0.67 0.475351
Target:  5'- aGCACCcCCGgAGAacGCACCGCUGGc -3'
miRNA:   3'- -UGUGGcGGCaUCUacCGUGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 64309 0.67 0.475351
Target:  5'- -gGCCGUCGUGG-UGGUugaacACCGCCa-- -3'
miRNA:   3'- ugUGGCGGCAUCuACCG-----UGGCGGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.