Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19014 | 3' | -59.2 | NC_004684.1 | + | 57901 | 0.66 | 0.534997 |
Target: 5'- -gGCCggGCUGaAGGUGGCcgggcugACCGCCGAu -3' miRNA: 3'- ugUGG--CGGCaUCUACCG-------UGGCGGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 56038 | 0.66 | 0.505301 |
Target: 5'- cCACCaCCGUGGGccUGGagGCCGCCGu- -3' miRNA: 3'- uGUGGcGGCAUCU--ACCg-UGGCGGCuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 50648 | 0.66 | 0.515465 |
Target: 5'- gACACCGCCGUcggGGGUGcggaccaggcguGCGCCcgguGCCGu- -3' miRNA: 3'- -UGUGGCGGCA---UCUAC------------CGUGG----CGGCuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 751 | 0.66 | 0.525711 |
Target: 5'- gACGCC-CUGgcGGcgcuccUGGaCACCGCCGAGg -3' miRNA: 3'- -UGUGGcGGCauCU------ACC-GUGGCGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 10348 | 0.66 | 0.516486 |
Target: 5'- gACcCCGCCGgggaggacaugcgcgAGAUcgcGcGCACCGCCGGGu -3' miRNA: 3'- -UGuGGCGGCa--------------UCUA---C-CGUGGCGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 63589 | 0.66 | 0.536033 |
Target: 5'- uGCGCgGCgCGgcGGUGGuUACCGCCu-- -3' miRNA: 3'- -UGUGgCG-GCauCUACC-GUGGCGGcuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 12612 | 0.66 | 0.536033 |
Target: 5'- cACGCCGCgCaccuuGcgGGCACCGgCGAGg -3' miRNA: 3'- -UGUGGCG-Gcau--CuaCCGUGGCgGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 8675 | 0.66 | 0.546425 |
Target: 5'- -aGCUGCUGUuccAGGUGGCgcagACCGCCu-- -3' miRNA: 3'- ugUGGCGGCA---UCUACCG----UGGCGGcuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 34486 | 0.66 | 0.546425 |
Target: 5'- gGCACCGCCGaGGA---CACCcCCGAAa -3' miRNA: 3'- -UGUGGCGGCaUCUaccGUGGcGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 4060 | 0.66 | 0.505301 |
Target: 5'- cCAUCGCCGggugaccGGGUGGUgggACUGUCGAAg -3' miRNA: 3'- uGUGGCGGCa------UCUACCG---UGGCGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 18210 | 0.66 | 0.525711 |
Target: 5'- -gGCCGCCGccGccGcCGCCGCCGAGa -3' miRNA: 3'- ugUGGCGGCauCuaCcGUGGCGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 42225 | 0.66 | 0.536033 |
Target: 5'- -gGCCGCCGgugucGGCACCgGCgCGAAg -3' miRNA: 3'- ugUGGCGGCaucuaCCGUGG-CG-GCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 47057 | 0.66 | 0.524683 |
Target: 5'- uGCACCgggcgacGCCGaucucGAUGGcCGCCGCCGc- -3' miRNA: 3'- -UGUGG-------CGGCau---CUACC-GUGGCGGCuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 40101 | 0.66 | 0.556879 |
Target: 5'- -gGCCgaucucgugGCCGUAGcgGGCGCUGgCGGc -3' miRNA: 3'- ugUGG---------CGGCAUCuaCCGUGGCgGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 8567 | 0.66 | 0.546425 |
Target: 5'- -uGCCGCaCG-AGAUGaGC-CUGCCGAGc -3' miRNA: 3'- ugUGGCG-GCaUCUAC-CGuGGCGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 38739 | 0.66 | 0.556879 |
Target: 5'- uCACCGCCGUcucgcGGCACCGgaaCGGGu -3' miRNA: 3'- uGUGGCGGCAucua-CCGUGGCg--GCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 41621 | 0.66 | 0.525711 |
Target: 5'- -uGCCGCCgGUGGAgccGGaCGCCagGCCGGGg -3' miRNA: 3'- ugUGGCGG-CAUCUa--CC-GUGG--CGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 31088 | 0.66 | 0.536033 |
Target: 5'- -uGCCGCCGaGGGcUGGCAggaCGCCGc- -3' miRNA: 3'- ugUGGCGGCaUCU-ACCGUg--GCGGCuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 40992 | 0.66 | 0.515465 |
Target: 5'- cGCGCCGgUGgcGGcguUGGCcagaucGCCGCCGAc -3' miRNA: 3'- -UGUGGCgGCauCU---ACCG------UGGCGGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 54346 | 0.66 | 0.556879 |
Target: 5'- aGCGCgGCgGUGGAgauguUGGCAagUGCCGGGg -3' miRNA: 3'- -UGUGgCGgCAUCU-----ACCGUg-GCGGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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