miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19014 3' -59.2 NC_004684.1 + 397 0.74 0.177874
Target:  5'- uCACCGCCGUGGcgGGCAa-GCUGGg -3'
miRNA:   3'- uGUGGCGGCAUCuaCCGUggCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 706 0.79 0.072298
Target:  5'- cCGCCGCCGggugGGAagaccugGGCACCGCCGGu -3'
miRNA:   3'- uGUGGCGGCa---UCUa------CCGUGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 751 0.66 0.525711
Target:  5'- gACGCC-CUGgcGGcgcuccUGGaCACCGCCGAGg -3'
miRNA:   3'- -UGUGGcGGCauCU------ACC-GUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 1483 0.69 0.374054
Target:  5'- cUACgCGCCGgAGGUGGC-CCGCCu-- -3'
miRNA:   3'- uGUG-GCGGCaUCUACCGuGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 3480 0.68 0.400215
Target:  5'- uACAaCGCCGUuacccgguaccuGGAccaccUGGCACCGCUGGg -3'
miRNA:   3'- -UGUgGCGGCA------------UCU-----ACCGUGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 3809 0.67 0.459744
Target:  5'- cCACCGCCGcgccgcgcaggccgaUGGAccugaUGGCAgCgGCCGAGg -3'
miRNA:   3'- uGUGGCGGC---------------AUCU-----ACCGU-GgCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 4060 0.66 0.505301
Target:  5'- cCAUCGCCGggugaccGGGUGGUgggACUGUCGAAg -3'
miRNA:   3'- uGUGGCGGCa------UCUACCG---UGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 4497 0.72 0.230442
Target:  5'- gGC-CCGCCGUGGcaacGGCAUgGCCGGGa -3'
miRNA:   3'- -UGuGGCGGCAUCua--CCGUGgCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 6068 0.72 0.228689
Target:  5'- uACGCCGCCGaGGgcGGCggcccggcggcgguGCUGCCGGAa -3'
miRNA:   3'- -UGUGGCGGCaUCuaCCG--------------UGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 6137 0.66 0.515465
Target:  5'- gACACCGCCGcc-AUGGCcCUGCUGu- -3'
miRNA:   3'- -UGUGGCGGCaucUACCGuGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 7103 0.71 0.274615
Target:  5'- -gGCCGCCGaGGAccgGGCcacgcaaccgccACCGCCGAGg -3'
miRNA:   3'- ugUGGCGGCaUCUa--CCG------------UGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 7503 0.67 0.485239
Target:  5'- uGCGCCGCCGcaucgGGGUggaccugcccGGCACCGaCCu-- -3'
miRNA:   3'- -UGUGGCGGCa----UCUA----------CCGUGGC-GGcuu -5'
19014 3' -59.2 NC_004684.1 + 7913 0.69 0.356444
Target:  5'- -gGCCGCUGgccgcgcAGGUGGUggacaucGCCGCCGAc -3'
miRNA:   3'- ugUGGCGGCa------UCUACCG-------UGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 8567 0.66 0.546425
Target:  5'- -uGCCGCaCG-AGAUGaGC-CUGCCGAGc -3'
miRNA:   3'- ugUGGCG-GCaUCUAC-CGuGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 8631 0.67 0.446313
Target:  5'- gGCACCGCCGauccucGGCAcccCCGCCGu- -3'
miRNA:   3'- -UGUGGCGGCaucua-CCGU---GGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 8675 0.66 0.546425
Target:  5'- -aGCUGCUGUuccAGGUGGCgcagACCGCCu-- -3'
miRNA:   3'- ugUGGCGGCA---UCUACCG----UGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 9849 0.76 0.136234
Target:  5'- uCACCGCCGccGGUGaGCuGCCGCCGGAu -3'
miRNA:   3'- uGUGGCGGCauCUAC-CG-UGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 10348 0.66 0.516486
Target:  5'- gACcCCGCCGgggaggacaugcgcgAGAUcgcGcGCACCGCCGGGu -3'
miRNA:   3'- -UGuGGCGGCa--------------UCUA---C-CGUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 12612 0.66 0.536033
Target:  5'- cACGCCGCgCaccuuGcgGGCACCGgCGAGg -3'
miRNA:   3'- -UGUGGCG-Gcau--CuaCCGUGGCgGCUU- -5'
19014 3' -59.2 NC_004684.1 + 12871 0.69 0.357269
Target:  5'- cCACCGCCGa----GGcCGCCGCCGGGg -3'
miRNA:   3'- uGUGGCGGCaucuaCC-GUGGCGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.