miRNA display CGI


Results 21 - 40 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19014 3' -59.2 NC_004684.1 + 12940 0.67 0.455885
Target:  5'- uCGCCGCCGUc---GGCACCcCCGGu -3'
miRNA:   3'- uGUGGCGGCAucuaCCGUGGcGGCUu -5'
19014 3' -59.2 NC_004684.1 + 13112 0.7 0.333099
Target:  5'- cGCACCcCCGgccGGGUGGCGgCGCUGGc -3'
miRNA:   3'- -UGUGGcGGCa--UCUACCGUgGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 13282 0.74 0.168728
Target:  5'- -gGCCGCCGguggcuGGUGcGCGCCGUCGGAg -3'
miRNA:   3'- ugUGGCGGCau----CUAC-CGUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 15150 0.68 0.424734
Target:  5'- gUACCGCCGcu-GUGGCACCacggccugaucgacGCCGGGg -3'
miRNA:   3'- uGUGGCGGCaucUACCGUGG--------------CGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 16910 0.67 0.465565
Target:  5'- cACACCGCCGaaca--GCAUCGCUGAGa -3'
miRNA:   3'- -UGUGGCGGCaucuacCGUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 18147 0.7 0.336251
Target:  5'- cGCGCCGCUGUGGGgcgacgUgccgacgcccggcccGGCACCGaCCGAc -3'
miRNA:   3'- -UGUGGCGGCAUCU------A---------------CCGUGGC-GGCUu -5'
19014 3' -59.2 NC_004684.1 + 18210 0.66 0.525711
Target:  5'- -gGCCGCCGccGccGcCGCCGCCGAGa -3'
miRNA:   3'- ugUGGCGGCauCuaCcGUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 18274 0.67 0.485239
Target:  5'- cACGCCcgGCCGccuGcUGGCACCGaCCGGc -3'
miRNA:   3'- -UGUGG--CGGCau-CuACCGUGGC-GGCUu -5'
19014 3' -59.2 NC_004684.1 + 18286 0.7 0.333099
Target:  5'- gACGCCGaCGgcGAccugUGGCACCuGCCGGu -3'
miRNA:   3'- -UGUGGCgGCauCU----ACCGUGG-CGGCUu -5'
19014 3' -59.2 NC_004684.1 + 20308 0.7 0.333099
Target:  5'- gGCACCGCCGUuc-UGGUGCCcuggcaauggGCCGGg -3'
miRNA:   3'- -UGUGGCGGCAucuACCGUGG----------CGGCUu -5'
19014 3' -59.2 NC_004684.1 + 21508 0.68 0.391365
Target:  5'- uCGCCGCCagcGUGGAcGGCGCgcacaugauCGCCGAc -3'
miRNA:   3'- uGUGGCGG---CAUCUaCCGUG---------GCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 22622 0.69 0.374054
Target:  5'- uACGgCGCUGUGGGaGGcCGCCGCCa-- -3'
miRNA:   3'- -UGUgGCGGCAUCUaCC-GUGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 23591 0.68 0.436855
Target:  5'- aACACCGCCGccGGUGGUAucacCCGCgCGc- -3'
miRNA:   3'- -UGUGGCGGCauCUACCGU----GGCG-GCuu -5'
19014 3' -59.2 NC_004684.1 + 24490 0.67 0.495224
Target:  5'- cUACCGCCGgGGgcGGUGCCGCaGGg -3'
miRNA:   3'- uGUGGCGGCaUCuaCCGUGGCGgCUu -5'
19014 3' -59.2 NC_004684.1 + 24887 0.67 0.445362
Target:  5'- cGCGCCaUCGUggcuacgAGAUGGcCGCCGCCGc- -3'
miRNA:   3'- -UGUGGcGGCA-------UCUACC-GUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 25931 0.7 0.320706
Target:  5'- aGCACCGCCGgggucagcccacuGAcaccggcGGCACCGCCGc- -3'
miRNA:   3'- -UGUGGCGGCau-----------CUa------CCGUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 26949 0.68 0.436855
Target:  5'- -gGCCGCCug----GGCACCGCUGAc -3'
miRNA:   3'- ugUGGCGGcaucuaCCGUGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 27938 0.72 0.230442
Target:  5'- cUACCGCCGgAGcUGGCACCgugguacgucGCCGAAc -3'
miRNA:   3'- uGUGGCGGCaUCuACCGUGG----------CGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 28580 0.79 0.078621
Target:  5'- gGCACCGCCa-GGcgGGCACCGCCGc- -3'
miRNA:   3'- -UGUGGCGGcaUCuaCCGUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 30723 0.67 0.450128
Target:  5'- uCGCCGCCGUcGAUGGUGguggccucccaguauUCGCUGAc -3'
miRNA:   3'- uGUGGCGGCAuCUACCGU---------------GGCGGCUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.