miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19014 3' -59.2 NC_004684.1 + 4497 0.72 0.230442
Target:  5'- gGC-CCGCCGUGGcaacGGCAUgGCCGGGa -3'
miRNA:   3'- -UGuGGCGGCAUCua--CCGUGgCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 57497 0.71 0.274614
Target:  5'- aGCGCCGCaCGcAGGUGcCugCGCCGGAu -3'
miRNA:   3'- -UGUGGCG-GCaUCUACcGugGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 7103 0.71 0.274615
Target:  5'- -gGCCGCCGaGGAccgGGCcacgcaaccgccACCGCCGAGg -3'
miRNA:   3'- ugUGGCGGCaUCUa--CCG------------UGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 42633 0.71 0.281451
Target:  5'- cCGCCGCCGgugcUGGUGCCGCCa-- -3'
miRNA:   3'- uGUGGCGGCaucuACCGUGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 45102 0.71 0.281451
Target:  5'- gGCACCGCCGccgcGcgGGCcuugGCCGCCGc- -3'
miRNA:   3'- -UGUGGCGGCau--CuaCCG----UGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 62094 0.7 0.310149
Target:  5'- cGCGUCGUCGUAGcUGGCGCUGgCGAAc -3'
miRNA:   3'- -UGUGGCGGCAUCuACCGUGGCgGCUU- -5'
19014 3' -59.2 NC_004684.1 + 44821 0.7 0.317663
Target:  5'- aACACCGCCGUAccGAccgaugUGGCgauACCGgCGAAc -3'
miRNA:   3'- -UGUGGCGGCAU--CU------ACCG---UGGCgGCUU- -5'
19014 3' -59.2 NC_004684.1 + 49047 0.7 0.317663
Target:  5'- cGCGCCGCCGgucggcuccggGGgcGGCACCGgCGu- -3'
miRNA:   3'- -UGUGGCGGCa----------UCuaCCGUGGCgGCuu -5'
19014 3' -59.2 NC_004684.1 + 25931 0.7 0.320706
Target:  5'- aGCACCGCCGgggucagcccacuGAcaccggcGGCACCGCCGc- -3'
miRNA:   3'- -UGUGGCGGCau-----------CUa------CCGUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 18286 0.7 0.333099
Target:  5'- gACGCCGaCGgcGAccugUGGCACCuGCCGGu -3'
miRNA:   3'- -UGUGGCgGCauCU----ACCGUGG-CGGCUu -5'
19014 3' -59.2 NC_004684.1 + 44528 0.7 0.333099
Target:  5'- -gGCCGCCGUGG-UGGC-CCGgaCGAAc -3'
miRNA:   3'- ugUGGCGGCAUCuACCGuGGCg-GCUU- -5'
19014 3' -59.2 NC_004684.1 + 13112 0.7 0.333099
Target:  5'- cGCACCcCCGgccGGGUGGCGgCGCUGGc -3'
miRNA:   3'- -UGUGGcGGCa--UCUACCGUgGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 20308 0.7 0.333099
Target:  5'- gGCACCGCCGUuc-UGGUGCCcuggcaauggGCCGGg -3'
miRNA:   3'- -UGUGGCGGCAucuACCGUGG----------CGGCUu -5'
19014 3' -59.2 NC_004684.1 + 18147 0.7 0.336251
Target:  5'- cGCGCCGCUGUGGGgcgacgUgccgacgcccggcccGGCACCGaCCGAc -3'
miRNA:   3'- -UGUGGCGGCAUCU------A---------------CCGUGGC-GGCUu -5'
19014 3' -59.2 NC_004684.1 + 35413 0.69 0.340222
Target:  5'- -aGCCGCCGaGGAgcgcgggaggcgaUGGUcCCGCCGGAc -3'
miRNA:   3'- ugUGGCGGCaUCU-------------ACCGuGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 40201 0.69 0.34102
Target:  5'- cGCACCGCCGccaaAGAUcgccguggccaGGuCGCCGCCGu- -3'
miRNA:   3'- -UGUGGCGGCa---UCUA-----------CC-GUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 7913 0.69 0.356444
Target:  5'- -gGCCGCUGgccgcgcAGGUGGUggacaucGCCGCCGAc -3'
miRNA:   3'- ugUGGCGGCa------UCUACCG-------UGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 12871 0.69 0.357269
Target:  5'- cCACCGCCGa----GGcCGCCGCCGGGg -3'
miRNA:   3'- uGUGGCGGCaucuaCC-GUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 38098 0.69 0.374054
Target:  5'- cCACCGCCGUcGGAguucGCGgUGCCGGAg -3'
miRNA:   3'- uGUGGCGGCA-UCUac--CGUgGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 22622 0.69 0.374054
Target:  5'- uACGgCGCUGUGGGaGGcCGCCGCCa-- -3'
miRNA:   3'- -UGUgGCGGCAUCUaCC-GUGGCGGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.