miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19014 3' -59.2 NC_004684.1 + 42866 1.05 0.000931
Target:  5'- cACACCGCCGUAGAUGGCACCGCCGAAc -3'
miRNA:   3'- -UGUGGCGGCAUCUACCGUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 58388 0.81 0.053047
Target:  5'- gGCACCGCgCGUGGAggccuUGGCccgGCCGCCGGAa -3'
miRNA:   3'- -UGUGGCG-GCAUCU-----ACCG---UGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 706 0.79 0.072298
Target:  5'- cCGCCGCCGggugGGAagaccugGGCACCGCCGGu -3'
miRNA:   3'- uGUGGCGGCa---UCUa------CCGUGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 28580 0.79 0.078621
Target:  5'- gGCACCGCCa-GGcgGGCACCGCCGc- -3'
miRNA:   3'- -UGUGGCGGcaUCuaCCGUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 36195 0.78 0.086425
Target:  5'- gGCACCucaGCCGUGGAugcagcugcgcagcgUGGcCACCGCCGAGa -3'
miRNA:   3'- -UGUGG---CGGCAUCU---------------ACC-GUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 41720 0.77 0.106616
Target:  5'- -uGCCGCCGUAGGUcgcgcccugcccGGUACCGCCGc- -3'
miRNA:   3'- ugUGGCGGCAUCUA------------CCGUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 9849 0.76 0.136234
Target:  5'- uCACCGCCGccGGUGaGCuGCCGCCGGAu -3'
miRNA:   3'- uGUGGCGGCauCUAC-CG-UGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 46627 0.75 0.147685
Target:  5'- cCACCGCCuccgguGUGGAcGGCACCGCCu-- -3'
miRNA:   3'- uGUGGCGG------CAUCUaCCGUGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 39941 0.75 0.151693
Target:  5'- uCACCGCCGguGGUGGCACCGCg--- -3'
miRNA:   3'- uGUGGCGGCauCUACCGUGGCGgcuu -5'
19014 3' -59.2 NC_004684.1 + 40792 0.74 0.160006
Target:  5'- gACGCCGCCGccGGUGGCgaacccgcgcacACCGCCGc- -3'
miRNA:   3'- -UGUGGCGGCauCUACCG------------UGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 13282 0.74 0.168728
Target:  5'- -gGCCGCCGguggcuGGUGcGCGCCGUCGGAg -3'
miRNA:   3'- ugUGGCGGCau----CUAC-CGUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 52604 0.74 0.176475
Target:  5'- cGCGCCGCCGUAGuUGuGCgccaguacguccacGCCGCUGAu -3'
miRNA:   3'- -UGUGGCGGCAUCuAC-CG--------------UGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 397 0.74 0.177874
Target:  5'- uCACCGCCGUGGcgGGCAa-GCUGGg -3'
miRNA:   3'- uGUGGCGGCAUCuaCCGUggCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 53654 0.74 0.18261
Target:  5'- aGCACCGagGUGG-UGGCACCGaCCGAc -3'
miRNA:   3'- -UGUGGCggCAUCuACCGUGGC-GGCUu -5'
19014 3' -59.2 NC_004684.1 + 36970 0.73 0.187457
Target:  5'- cACGCCGCCGUcgaacAGGUguugccacGGCAgCGCCGGGa -3'
miRNA:   3'- -UGUGGCGGCA-----UCUA--------CCGUgGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 43324 0.73 0.197492
Target:  5'- cACGCCGuuGUAGGUGaccGUGCCGUCGGGg -3'
miRNA:   3'- -UGUGGCggCAUCUAC---CGUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 31112 0.72 0.224645
Target:  5'- aGCACCGCCucGUucuUGGCcagGCCGCCGGAc -3'
miRNA:   3'- -UGUGGCGG--CAucuACCG---UGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 6068 0.72 0.228689
Target:  5'- uACGCCGCCGaGGgcGGCggcccggcggcgguGCUGCCGGAa -3'
miRNA:   3'- -UGUGGCGGCaUCuaCCG--------------UGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 37426 0.72 0.229856
Target:  5'- gACACCGCCacgguGGUGGCACCGgaggugaCCGAc -3'
miRNA:   3'- -UGUGGCGGcau--CUACCGUGGC-------GGCUu -5'
19014 3' -59.2 NC_004684.1 + 27938 0.72 0.230442
Target:  5'- cUACCGCCGgAGcUGGCACCgugguacgucGCCGAAc -3'
miRNA:   3'- uGUGGCGGCaUCuACCGUGG----------CGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.