miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19014 3' -59.2 NC_004684.1 + 51512 0.67 0.455885
Target:  5'- uCACCGCCGccUGGcgGGaCACCuucuccagguaGCCGAGc -3'
miRNA:   3'- uGUGGCGGC--AUCuaCC-GUGG-----------CGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 22622 0.69 0.374054
Target:  5'- uACGgCGCUGUGGGaGGcCGCCGCCa-- -3'
miRNA:   3'- -UGUgGCGGCAUCUaCC-GUGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 38098 0.69 0.374054
Target:  5'- cCACCGCCGUcGGAguucGCGgUGCCGGAg -3'
miRNA:   3'- uGUGGCGGCA-UCUac--CGUgGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 61312 0.68 0.427514
Target:  5'- aGCACCGCCGccg--GGcCGCCGCCc-- -3'
miRNA:   3'- -UGUGGCGGCaucuaCC-GUGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 23591 0.68 0.436855
Target:  5'- aACACCGCCGccGGUGGUAucacCCGCgCGc- -3'
miRNA:   3'- -UGUGGCGGCauCUACCGU----GGCG-GCuu -5'
19014 3' -59.2 NC_004684.1 + 24887 0.67 0.445362
Target:  5'- cGCGCCaUCGUggcuacgAGAUGGcCGCCGCCGc- -3'
miRNA:   3'- -UGUGGcGGCA-------UCUACC-GUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 8631 0.67 0.446313
Target:  5'- gGCACCGCCGauccucGGCAcccCCGCCGu- -3'
miRNA:   3'- -UGUGGCGGCaucua-CCGU---GGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 33074 0.67 0.446313
Target:  5'- uGCGCUGCUcaaucuGUccGGcGUGGCGCUGCCGAc -3'
miRNA:   3'- -UGUGGCGG------CA--UC-UACCGUGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 35990 0.67 0.446313
Target:  5'- cGCACaGUCG-GGGUGGUGcCCGCCGGAc -3'
miRNA:   3'- -UGUGgCGGCaUCUACCGU-GGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 1483 0.69 0.374054
Target:  5'- cUACgCGCCGgAGGUGGC-CCGCCu-- -3'
miRNA:   3'- uGUG-GCGGCaUCUACCGuGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 12871 0.69 0.357269
Target:  5'- cCACCGCCGa----GGcCGCCGCCGGGg -3'
miRNA:   3'- uGUGGCGGCaucuaCC-GUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 35413 0.69 0.340222
Target:  5'- -aGCCGCCGaGGAgcgcgggaggcgaUGGUcCCGCCGGAc -3'
miRNA:   3'- ugUGGCGGCaUCU-------------ACCGuGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 36195 0.78 0.086425
Target:  5'- gGCACCucaGCCGUGGAugcagcugcgcagcgUGGcCACCGCCGAGa -3'
miRNA:   3'- -UGUGG---CGGCAUCU---------------ACC-GUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 9849 0.76 0.136234
Target:  5'- uCACCGCCGccGGUGaGCuGCCGCCGGAu -3'
miRNA:   3'- uGUGGCGGCauCUAC-CG-UGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 13282 0.74 0.168728
Target:  5'- -gGCCGCCGguggcuGGUGcGCGCCGUCGGAg -3'
miRNA:   3'- ugUGGCGGCau----CUAC-CGUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 27938 0.72 0.230442
Target:  5'- cUACCGCCGgAGcUGGCACCgugguacgucGCCGAAc -3'
miRNA:   3'- uGUGGCGGCaUCuACCGUGG----------CGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 57497 0.71 0.274614
Target:  5'- aGCGCCGCaCGcAGGUGcCugCGCCGGAu -3'
miRNA:   3'- -UGUGGCG-GCaUCUACcGugGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 42633 0.71 0.281451
Target:  5'- cCGCCGCCGgugcUGGUGCCGCCa-- -3'
miRNA:   3'- uGUGGCGGCaucuACCGUGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 62094 0.7 0.310149
Target:  5'- cGCGUCGUCGUAGcUGGCGCUGgCGAAc -3'
miRNA:   3'- -UGUGGCGGCAUCuACCGUGGCgGCUU- -5'
19014 3' -59.2 NC_004684.1 + 44528 0.7 0.333099
Target:  5'- -gGCCGCCGUGG-UGGC-CCGgaCGAAc -3'
miRNA:   3'- ugUGGCGGCAUCuACCGuGGCg-GCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.